Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC138393.1-203ENST00000327086 343 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.39-201ENST00000362620 98 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-1249P-201ENST00000363237 111 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-266P-201ENST00000364225 107 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 RNU2-43P-201ENST00000410306 190 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AL591212.2-201ENST00000433923 257 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 RPL21P41-201ENST00000459863 264 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 RN7SL594P-201ENST00000470590 287 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 FCF1P8-201ENST00000510322 597 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 RNU4-77P-201ENST00000516692 156 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC069113.1-201ENST00000517763 267 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC008489.1-201ENST00000524271 483 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 SUB1P3-201ENST00000564581 315 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC002044.1-201ENST00000606707 158 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 AC062037.2-201ENST00000610137 73 ntBASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USHBP1Q8N6Y0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-1059P-201ENST00000363752 98 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 DEFB109C-201ENST00000382575 264 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 DEFB109B-201ENST00000382656 264 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-842P-201ENST00000384269 107 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 U3.19-201ENST00000390893 196 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 AC011816.1-201ENST00000441346 546 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 RPL29P29-201ENST00000448725 423 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 ANP32BP2-201ENST00000454525 545 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 BTF3L4P4-201ENST00000506381 449 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 AC009901.1-201ENST00000506703 541 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 SNORA31.3-201ENST00000516029 96 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.668-201ENST00000516233 93 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 AC022616.4-201ENST00000522985 181 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 HSBP1P1-201ENST00000555205 166 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 AL355297.3-201ENST00000604082 446 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 U73479.1-201ENST00000618062 168 ntBASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
USHBP1Q8N6Y0 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-450P-201ENST00000364654 107 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-1329P-201ENST00000365664 107 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 MIR517A-201ENST00000385001 87 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-712P-201ENST00000410558 100 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RPL21P90-201ENST00000415692 466 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 SSXP9-201ENST00000417503 292 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RPS12P23-201ENST00000419579 400 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 AL356535.1-201ENST00000440335 398 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 FTH1P25-201ENST00000447665 469 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RNU7-187P-201ENST00000458985 68 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 AC008571.1-201ENST00000467232 300 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 SNORD58B-201ENST00000607313 66 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 MIR15A-201ENST00000607334 83 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 AL021879.1-201ENST00000611756 288 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 AC107871.2-201ENST00000612894 502 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
USHBP1Q8N6Y0 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.151-201ENST00000363566 112 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.489-201ENST00000384410 101 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 HMGB1P27-201ENST00000431429 603 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AL590399.6-201ENST00000446396 307 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AL353752.1-201ENST00000454946 260 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 PCMTD1P1-201ENST00000455560 355 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 snoU13.3-201ENST00000459441 104 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC104564.1-201ENST00000493028 407 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 RPL22P13-201ENST00000493291 347 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 RN7SKP83-201ENST00000516512 178 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-388P-201ENST00000517012 105 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms