Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AP001273.1-201ENST00000624493 3152 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 RNU1-20P-201ENST00000363314 162 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 Y_RNA.127-201ENST00000363386 109 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 MIR659-201ENST00000384963 97 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AL357139.1-201ENST00000407792 426 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 RN7SKP167-201ENST00000411047 285 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 RPL23AP26-201ENST00000412728 464 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC079780.1-201ENST00000428259 207 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 H2AFZP5-201ENST00000446960 382 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC010409.1-201ENST00000487382 476 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 SNORA40.9-201ENST00000515895 93 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-426P-201ENST00000516464 97 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-844P-201ENST00000517175 102 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 MIR5695-201ENST00000579717 85 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC084757.4-201ENST00000616350 526 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC131238.1-201ENST00000617135 328 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 AC008079.2-201ENST00000623543 20396 ntBASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.19□□□□□ -1.58
SH3RF1Q7Z6J0 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 RN7SKP267-201ENST00000410381 285 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 WARS2P1-201ENST00000429678 537 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC139453.3-201ENST00000493276 369 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC097462.2-201ENST00000504623 481 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 MIR2116-201ENST00000517221 80 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 MIR5692C2-201ENST00000577959 77 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC034229.5-201ENST00000624258 185 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC125257.1-201ENST00000560400 2930 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 AC022893.2-201ENST00000564832 3296 ntBASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SH3RF1Q7Z6J0 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AL359693.1-201ENST00000614959 2407 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 MUC2-202ENST00000613187 4845 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNU1-94P-201ENST00000362627 173 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNU4-56P-201ENST00000364700 142 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 Y_RNA.357-201ENST00000365487 109 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-72P-201ENST00000384285 79 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNA5SP44-201ENST00000410446 133 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNU2-52P-201ENST00000410680 190 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-1245P-201ENST00000411130 106 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 Z85995.1-201ENST00000415547 335 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 COX6B1P7-201ENST00000430845 235 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 CYCSP32-201ENST00000440548 321 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 PHBP16-201ENST00000446318 950 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC105137.1-201ENST00000484355 562 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC015795.1-201ENST00000513669 327 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 SNORA67.7-201ENST00000516664 135 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC107016.1-201ENST00000550463 337 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 MIR3921-201ENST00000577308 85 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC005176.2-201ENST00000596933 147 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 BPIFA4P-203ENST00000603168 689 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 AC099669.2-201ENST00000616549 437 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SH3RF1Q7Z6J0 U3.53-201ENST00000628922 216 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms