Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AP000889.1-201ENST00000530968 660 ntBASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 CYCSP29-201ENST00000533731 318 ntBASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 SYF2P1-201ENST00000550658 413 ntBASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 AC016727.2-201ENST00000603988 621 ntBASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 AL021879.1-201ENST00000611756 288 ntBASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.93□□□□□ -1.62
BRPF3Q9ULD4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 ZNF72P-201ENST00000425869 1908 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL159169.1-201ENST00000421119 127 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AC009220.1-201ENST00000451614 275 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AF213884.1-201ENST00000488102 463 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 SNORA40.14-201ENST00000516543 86 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 RNU7-4P-201ENST00000516961 62 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 RNU6-1271P-201ENST00000517049 105 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 SNORA31.19-201ENST00000517079 126 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 RNA5SP165-201ENST00000517142 115 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AC131281.1-201ENST00000522984 164 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 TVP23BP1-201ENST00000557500 617 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 MYL12BP1-201ENST00000569826 507 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 MIR4474-201ENST00000579189 78 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 MIR5188-201ENST00000583467 113 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL158827.2-201ENST00000602494 330 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL645944.1-201ENST00000603857 493 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AC004852.3-201ENST00000614131 326 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 MIR3653-201ENST00000625572 110 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AL691447.3-201ENST00000635020 330 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 U6.98-201ENST00000637157 84 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AC008568.2-201ENST00000623862 2313 ntBASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
BRPF3Q9ULD4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 RN7SKP227-201ENST00000364445 330 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 Y_RNA.533-201ENST00000384596 114 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 MIR521-1-201ENST00000384902 87 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 HMGN2P8-201ENST00000391458 268 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 MIR1252-201ENST00000408861 65 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AC087650.1-201ENST00000431445 468 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 U8.21-201ENST00000459536 136 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AC008121.1-201ENST00000603244 268 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 AL445567.2-201ENST00000618935 498 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 MIR6758-201ENST00000620653 63 ntBASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRPF3Q9ULD4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.9□□□□□ -1.62
BRPF3Q9ULD4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
BRPF3Q9ULD4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.9□□□□□ -1.62
BRPF3Q9ULD4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
BRPF3Q9ULD4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.9□□□□□ -1.62
BRPF3Q9ULD4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.62
BRPF3Q9ULD4 RNY3P11-201ENST00000364153 102 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 Y_RNA.210-201ENST00000364161 110 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 Y_RNA.512-201ENST00000384518 102 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 MIR141-201ENST00000384975 95 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 SNORA40C-201ENST00000391285 128 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 Y_RNA.625-201ENST00000411256 107 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AL117339.3-201ENST00000418733 162 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AC007560.1-201ENST00000426912 237 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AC099522.1-202ENST00000514718 367 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 RN7SKP289-201ENST00000517244 295 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AC103996.1-201ENST00000555468 102 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 TRAV28-201ENST00000557548 323 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 RN7SL600P-201ENST00000581811 299 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AL161629.2-201ENST00000615347 275 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 AP001486.2-201ENST00000561652 5113 ntBASIC4.9□□□□□ -1.63
BRPF3Q9ULD4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms