Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 RNY3P16-201ENST00000516338 101 ntBASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 RN7SKP21-201ENST00000516503 220 ntBASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 RNA5SP468-201ENST00000516782 93 ntBASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 SNORA31.23-201ENST00000517219 133 ntBASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 RN7SL690P-201ENST00000582087 240 ntBASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
LIMD1Q9UGP4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
LIMD1Q9UGP4 AL590240.1-201ENST00000334118 313 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 RNU6-1310P-201ENST00000384153 107 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 U3.39-201ENST00000408569 239 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 RNA5SP390-201ENST00000410191 113 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 ELOCP19-201ENST00000411919 318 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 BX510359.2-201ENST00000417920 305 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 AC012306.1-201ENST00000423267 114 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 RPL23AP1-201ENST00000428990 471 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 RNU6-625P-201ENST00000459412 107 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 RPL23AP56-201ENST00000460778 453 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 ENPP7P9-201ENST00000514456 627 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 AL356575.1-201ENST00000603008 283 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 A2MP1-204ENST00000566278 4130 ntBASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIMD1Q9UGP4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AC092593.1-201ENST00000515413 1815 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 Y_RNA.179-201ENST00000363844 90 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 RNU6-487P-201ENST00000365430 104 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 SNORA48.4-201ENST00000391089 134 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AL357139.1-201ENST00000407792 426 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AL732292.1-201ENST00000426692 226 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 ENPP7P11-201ENST00000505915 627 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AL451007.1-201ENST00000595491 289 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AL356218.2-201ENST00000605264 187 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AL021997.2-201ENST00000615674 271 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 AL365265.1-201ENST00000621045 234 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 DLD-214ENST00000639772 421 ntTSL 5 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 MTND5P35-201ENST00000557537 1720 ntBASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.14□□□□□ -1.59
LIMD1Q9UGP4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 RNU4-56P-201ENST00000364700 142 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 RNA5SP189-201ENST00000364920 115 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 Y_RNA.343-201ENST00000365354 112 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 SNORA2.3-201ENST00000383920 135 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 RNU6-1027P-201ENST00000383998 107 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 RNU6-245P-201ENST00000384020 107 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 SNORA70F-201ENST00000384142 135 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 SNORA70.10-201ENST00000384515 134 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 MIR487A-201ENST00000385009 80 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 MIR320B2-201ENST00000408479 138 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 SNORA77-201ENST00000408716 125 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 AC138623.1-201ENST00000418060 216 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 FTH1P6-201ENST00000430768 320 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 VDAC1P3-201ENST00000434069 851 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 AC026402.1-201ENST00000513642 170 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 AC115990.1-201ENST00000526957 301 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 AC018448.1-201ENST00000552843 316 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 AC015813.6-201ENST00000624409 5808 ntBASIC5.13□□□□□ -1.59
LIMD1Q9UGP4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.12□□□□□ -1.59
LIMD1Q9UGP4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.12□□□□□ -1.59
LIMD1Q9UGP4 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIMD1Q9UGP4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms