Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NUP88Q99567 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
NUP88Q99567 RNU6-1252P-201ENST00000363054 104 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 RNU6-270P-201ENST00000364131 105 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 RNU6-867P-201ENST00000364956 107 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 RNU6-767P-201ENST00000384132 107 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 Y_RNA.480-201ENST00000384364 102 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 RNU6-328P-201ENST00000390887 106 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 EIF4E2P1-201ENST00000393781 255 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AC096664.2-201ENST00000411843 406 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 RPLP0P7-201ENST00000416050 667 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.78□□□□□ -1.8
NUP88Q99567 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.78□□□□□ -1.8
NUP88Q99567 RN7SL863P-201ENST00000462370 296 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AC128713.1-201ENST00000471495 306 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 RNA5SP341-201ENST00000516261 117 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 MIR892C-201ENST00000516410 77 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 Y_RNA.702-201ENST00000516843 96 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.78□□□□□ -1.8
NUP88Q99567 MIR2682-201ENST00000580305 110 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 MIR3941-201ENST00000582572 103 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AC002044.1-201ENST00000606707 158 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AL357078.3-201ENST00000607528 618 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AL121757.2-201ENST00000611223 313 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AC009248.2-201ENST00000619826 254 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.78□□□□□ -1.8
NUP88Q99567 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NUP88Q99567 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
NUP88Q99567 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NUP88Q99567 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.78□□□□□ -1.8
NUP88Q99567 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.78□□□□□ -1.8
NUP88Q99567 AC005183.1-201ENST00000603687 1979 ntBASIC3.78□□□□□ -1.8
NUP88Q99567 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.78□□□□□ -1.8
NUP88Q99567 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NUP88Q99567 AC007496.3-201ENST00000624987 3443 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
NUP88Q99567 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
NUP88Q99567 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.77□□□□□ -1.81
NUP88Q99567 RNU1-73P-201ENST00000383971 164 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 SNORA75B-201ENST00000384053 137 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 Y_RNA.530-201ENST00000384587 101 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 MIR10A-201ENST00000385043 110 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 RNU6-510P-201ENST00000391239 108 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 Y_RNA.623-201ENST00000411128 95 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 RPL26P27-201ENST00000414397 437 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.77□□□□□ -1.81
NUP88Q99567 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.77□□□□□ -1.81
NUP88Q99567 BRK1P2-201ENST00000442875 223 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC010099.1-201ENST00000455434 375 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 HMGN1P18-201ENST00000457642 277 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC092798.1-201ENST00000458542 409 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 RN7SL442P-201ENST00000473804 320 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC021205.2-201ENST00000480069 347 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC079140.5-201ENST00000507882 310 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 RNU6-711P-201ENST00000517255 106 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC069113.1-201ENST00000517763 267 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.77□□□□□ -1.81
NUP88Q99567 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.77□□□□□ -1.81
NUP88Q99567 AC107953.1-201ENST00000522216 297 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 PSMA3P-201ENST00000555485 635 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC005668.1-201ENST00000571142 476 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 MIR4474-201ENST00000579189 78 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.77□□□□□ -1.81
NUP88Q99567 MIR4325-201ENST00000583049 90 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC007938.3-201ENST00000604965 623 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 uc_338.1-201ENST00000612113 180 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC103705.1-201ENST00000619013 241 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 PLCE1P1-201ENST00000622094 305 ntBASIC3.77□□□□□ -1.81
NUP88Q99567 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.77□□□□□ -1.81
NUP88Q99567 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.77□□□□□ -1.81
NUP88Q99567 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.77□□□□□ -1.81
NUP88Q99567 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.76□□□□□ -1.81
NUP88Q99567 MTND4P12-201ENST00000498999 1377 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
NUP88Q99567 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NUP88Q99567 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
NUP88Q99567 RNU6-266P-201ENST00000364225 107 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RNU5E-4P-201ENST00000364931 120 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 MIR34A-201ENST00000385130 110 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 SNORA40C-201ENST00000391285 128 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RPL5P18-201ENST00000406671 891 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RNU6-1077P-201ENST00000410506 102 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RNA5SP229-201ENST00000410809 99 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RNA5SP31-201ENST00000411144 127 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 AL353621.1-201ENST00000418219 243 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 PGBD4P6-201ENST00000421501 610 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.76□□□□□ -1.81
NUP88Q99567 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.76□□□□□ -1.81
NUP88Q99567 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
NUP88Q99567 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.76□□□□□ -1.81
NUP88Q99567 AC109925.1-201ENST00000478069 331 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RPS29P20-201ENST00000489592 171 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 210.6 ms