Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 Z75746.1-201ENST00000440243 2080 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 U8.3-201ENST00000363321 132 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 AC097463.2-201ENST00000421074 142 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 AL031667.1-201ENST00000440222 725 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 MTND4P25-201ENST00000441039 533 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 IPO7P1-201ENST00000442031 636 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 RPL36AP48-201ENST00000485521 314 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 RPL39P36-201ENST00000490784 156 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 RNA5SP24-201ENST00000516478 95 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 AC087241.2-201ENST00000535801 324 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 AC008088.1-201ENST00000580993 280 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS39Q96JC1 BNIP3P9-201ENST00000603714 553 ntBASIC2.38□□□□□ -2.03
VPS39Q96JC1 AL596028.1-201ENST00000326971 197 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 RNY4P34-201ENST00000364779 95 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 RNU5A-2P-201ENST00000384337 116 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 MIR1302-8-201ENST00000408342 128 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 RNU2-62P-201ENST00000410868 191 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC114491.1-201ENST00000416095 246 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 RAC1P6-201ENST00000423911 575 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AL592045.1-201ENST00000429867 352 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 MTND6P13-201ENST00000443510 523 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 RPL7P12-201ENST00000446719 750 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC108938.1-201ENST00000451204 136 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AL049873.1-201ENST00000480540 376 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC105137.2-201ENST00000569073 466 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 MIR4782-201ENST00000577987 79 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 BNIP3P8-201ENST00000597863 560 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC007621.1-201ENST00000604544 437 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC073114.1-201ENST00000612027 490 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC130324.3-201ENST00000614165 542 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 MIR6134-201ENST00000617606 109 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 MIR1291-201ENST00000627649 87 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 TEX21P-201ENST00000447107 1476 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
VPS39Q96JC1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS39Q96JC1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS39Q96JC1 AC016717.2-201ENST00000609089 5141 ntBASIC2.37□□□□□ -2.03
VPS39Q96JC1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS39Q96JC1 CDC27P3-201ENST00000635418 1910 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS39Q96JC1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS39Q96JC1 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS39Q96JC1 SNORD56.2-201ENST00000363242 71 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RNU1-91P-201ENST00000364746 163 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RNU6-1280P-201ENST00000365211 107 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 SNORA40.3-201ENST00000390964 122 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RNU6-817P-201ENST00000391083 104 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RPS3AP36-201ENST00000398190 775 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RPS3AP3-201ENST00000411933 242 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 MORF4L1P6-201ENST00000418771 268 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS39Q96JC1 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 HMGB3P12-201ENST00000438745 556 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC098826.2-201ENST00000452011 651 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS39Q96JC1 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 RPS3P1-201ENST00000456781 192 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RNU6-953P-201ENST00000459154 107 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC018437.1-201ENST00000492214 406 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC116655.1-201ENST00000508324 901 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC091965.2-201ENST00000512324 613 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 SMURF2P1-201ENST00000514992 481 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 Y_RNA.672-201ENST00000516289 104 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 OR5B19P-201ENST00000531766 928 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC078814.3-201ENST00000553036 491 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC012213.3-201ENST00000577199 777 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms