Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AL592437.2-201ENST00000421655 2434 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC135776.4-201ENST00000624300 1904 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AL353743.1-202ENST00000431724 1695 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-527P-201ENST00000363425 104 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.136-201ENST00000363444 102 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RN7SKP280-201ENST00000364196 304 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-1175P-201ENST00000365200 107 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-20P-201ENST00000384106 107 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-257P-201ENST00000410238 98 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 GNG5P5-201ENST00000420444 220 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RPS12P10-201ENST00000427031 377 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 MRPS10P1-201ENST00000448483 130 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 snoU109.2-201ENST00000459316 135 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RN7SL303P-201ENST00000469773 251 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RPL31P13-201ENST00000484151 370 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 RNU5F-8P-201ENST00000515941 111 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AL161713.1-201ENST00000555538 145 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AL359881.1-201ENST00000602916 267 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 AC005520.5-201ENST00000613926 164 ntBASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.22□□□□□ -1.57
SH3RF1Q7Z6J0 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.21□□□□□ -1.57
SH3RF1Q7Z6J0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.21□□□□□ -1.57
SH3RF1Q7Z6J0 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SH3RF1Q7Z6J0 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SH3RF1Q7Z6J0 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.57
SH3RF1Q7Z6J0 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SH3RF1Q7Z6J0 SMG1P4-204ENST00000523028 4131 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 Y_RNA.215-201ENST00000364204 112 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 Y_RNA.331-201ENST00000365267 102 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-1286P-201ENST00000383871 107 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 Y_RNA.446-201ENST00000384178 104 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 AC007919.1-201ENST00000429380 217 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 snoU13.22-201ENST00000459428 104 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RPL23AP49-201ENST00000492925 468 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RPL36AP41-201ENST00000493820 306 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-567P-201ENST00000516746 107 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RNA5SP291-201ENST00000517222 105 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 MRPL49P2-201ENST00000521066 465 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 AC068831.7-201ENST00000616954 363 ntBASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
SH3RF1Q7Z6J0 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 OR14L1P-202ENST00000641545 3009 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-105P-201ENST00000363909 104 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AL356387.2-201ENST00000422272 243 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 OOSP1P1-201ENST00000423265 274 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AL356867.1-201ENST00000429623 299 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 RPS29P17-201ENST00000430795 166 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AC096638.1-201ENST00000444678 216 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AC006026.2-201ENST00000457376 180 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 RPL26P26-201ENST00000480251 434 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 PDCD5P2-201ENST00000507570 312 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 RNU6-1256P-201ENST00000516539 103 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 RNA5SP170-201ENST00000517150 101 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AC233702.2-202ENST00000562547 291 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AC006130.2-201ENST00000586202 326 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AC005828.6-201ENST00000606610 232 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AP005019.3-201ENST00000620418 560 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 AL023881.1-201ENST00000621088 301 ntBASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC5.2□□□□□ -1.58
SH3RF1Q7Z6J0 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms