Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL355297.3-201ENST00000604082 446 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 MIR4275-201ENST00000636486 87 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A3Q01955 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A3Q01955 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
COL4A3Q01955 MTND5P7-201ENST00000413558 1798 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.6□□□□□ -1.83
COL4A3Q01955 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL4A3Q01955 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
COL4A3Q01955 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 RNU6-263P-201ENST00000363811 107 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 AL137014.1-201ENST00000420490 1226 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.6□□□□□ -1.83
COL4A3Q01955 AL356535.1-201ENST00000440335 398 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.6□□□□□ -1.83
COL4A3Q01955 AC133473.1-201ENST00000455173 299 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 RPL21P41-201ENST00000459863 264 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 RPL37P6-202ENST00000464216 403 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 RPL17P19-201ENST00000489069 552 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 AC069499.1-201ENST00000489433 509 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 Y_RNA.668-201ENST00000516233 93 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 RN7SKP258-201ENST00000517151 304 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A3Q01955 AC131281.1-201ENST00000522984 164 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 ERHP1-201ENST00000523006 310 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.6□□□□□ -1.83
COL4A3Q01955 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.6□□□□□ -1.83
COL4A3Q01955 MIR5680-201ENST00000577577 84 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
COL4A3Q01955 AC067852.3-201ENST00000589177 561 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.6□□□□□ -1.83
COL4A3Q01955 AC007619.2-201ENST00000605743 379 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A3Q01955 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
COL4A3Q01955 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A3Q01955 AL451142.2-201ENST00000429076 2090 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 AC118273.1-201ENST00000525324 3006 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 AP000542.2-201ENST00000623199 6179 ntBASIC3.6□□□□□ -1.83
COL4A3Q01955 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 RNU6-1249P-201ENST00000363237 111 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RNU6-1059P-201ENST00000363752 98 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RNA5SP42-201ENST00000364278 115 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RNU6-1329P-201ENST00000365664 107 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 AL121871.1-201ENST00000443413 436 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RPL7L1P1-201ENST00000448259 785 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A3Q01955 AL031274.1-201ENST00000450334 232 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RPL9P32-201ENST00000464118 620 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RPS23P3-201ENST00000470993 430 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A3Q01955 RNU6-1143P-201ENST00000516125 104 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 RN7SKP209-201ENST00000516888 304 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.59□□□□□ -1.83
COL4A3Q01955 AC069113.1-201ENST00000517763 267 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A3Q01955 MIR4276-201ENST00000584832 70 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 AC012669.1-201ENST00000603209 283 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 AC002044.1-201ENST00000606707 158 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 MIR15A-201ENST00000607334 83 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 MIR8062-201ENST00000621515 85 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.59□□□□□ -1.83
COL4A3Q01955 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.59□□□□□ -1.83
COL4A3Q01955 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A3Q01955 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A3Q01955 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A3Q01955 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A3Q01955 RNU6-874P-201ENST00000362390 105 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 RNU1-18P-201ENST00000363062 164 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 RNU6-266P-201ENST00000364225 107 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 Y_RNA.447-201ENST00000384184 113 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 MIR1252-201ENST00000408861 65 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.59□□□□□ -1.84
COL4A3Q01955 MRPS18CP6-201ENST00000423587 223 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 AC090774.1-201ENST00000435925 246 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.59□□□□□ -1.84
COL4A3Q01955 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A3Q01955 RNA5SP341-201ENST00000516261 117 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.59□□□□□ -1.84
COL4A3Q01955 Z98751.3-201ENST00000604447 521 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A3Q01955 SDR42E1P2-201ENST00000614861 481 ntBASIC3.59□□□□□ -1.84
COL4A3Q01955 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A3Q01955 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A3Q01955 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms