Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP000560.1-201ENST00000624150 1937 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 SNORA62.1-201ENST00000364287 154 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 SNORA22-201ENST00000383907 134 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 SNORA70.7-201ENST00000384159 133 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 SNORA22C-201ENST00000384614 134 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 DHFRP6-201ENST00000401776 268 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 RNU2-48P-201ENST00000410694 191 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 RNU4-27P-201ENST00000410889 139 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.85□□□□□ -2.27
FOXA3P55318 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.85□□□□□ -2.27
FOXA3P55318 RPL23AP76-201ENST00000441860 458 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 MTCO1P44-201ENST00000441935 243 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AL513124.1-201ENST00000450410 614 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC0.85□□□□□ -2.27
FOXA3P55318 OFD1P7Y-201ENST00000454643 1155 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC0.85□□□□□ -2.27
FOXA3P55318 PRELID3BP1-201ENST00000457142 540 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AC110760.3-202ENST00000515177 371 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC0.85□□□□□ -2.27
FOXA3P55318 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC0.85□□□□□ -2.27
FOXA3P55318 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.85□□□□□ -2.27
FOXA3P55318 MIR4303-201ENST00000581299 66 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 MIR3945-201ENST00000581853 98 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 MIR4295-201ENST00000585286 85 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AC023043.2-201ENST00000589678 1026 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC0.85□□□□□ -2.27
FOXA3P55318 BNIP3P27-201ENST00000599991 412 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AP002906.1-201ENST00000603405 233 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AC025811.1-201ENST00000604312 472 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 AL161798.1-201ENST00000604630 131 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 TUG1_2.1-201ENST00000614234 87 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
FOXA3P55318 AL121890.5-201ENST00000620848 304 ntBASIC0.85□□□□□ -2.27
FOXA3P55318 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.85□□□□□ -2.27
FOXA3P55318 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC0.84□□□□□ -2.27
FOXA3P55318 AC138393.1-203ENST00000327086 343 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 Y_RNA.25-201ENST00000362528 102 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 RNU6-1164P-201ENST00000364428 107 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 RNU6-1032P-201ENST00000384100 107 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 MIR513A1-201ENST00000385138 129 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 RNU6-932P-201ENST00000391108 106 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 SRIP3-201ENST00000413200 219 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.84□□□□□ -2.27
FOXA3P55318 GPM6BP2-201ENST00000432046 144 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 GPM6BP1-201ENST00000446387 144 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 FABP5P15-201ENST00000453566 214 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.84□□□□□ -2.27
FOXA3P55318 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.84□□□□□ -2.27
FOXA3P55318 PTP4A1P4-201ENST00000512479 322 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 RNU6-678P-201ENST00000516832 109 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.84□□□□□ -2.27
FOXA3P55318 COPS8P3-201ENST00000526024 482 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.84□□□□□ -2.27
FOXA3P55318 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC0.84□□□□□ -2.27
FOXA3P55318 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC0.84□□□□□ -2.27
FOXA3P55318 AC027807.1-201ENST00000559921 996 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.84□□□□□ -2.27
FOXA3P55318 WISP1-OT1-201ENST00000602893 642 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 AC016911.1-201ENST00000613297 452 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 MIR6134-201ENST00000617606 109 ntBASIC0.84□□□□□ -2.27
FOXA3P55318 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
FOXA3P55318 TEX21P-201ENST00000447107 1476 ntBASIC0.84□□□□□ -2.28
FOXA3P55318 NF1-214ENST00000490416 1329 ntTSL 3 BASIC0.84□□□□□ -2.28
FOXA3P55318 MTND5P9-201ENST00000503854 1755 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 HAUS6P2-201ENST00000433254 2404 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 SNRPEP3-201ENST00000338402 276 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 RNU6-223P-201ENST00000362830 107 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 RNU6-883P-201ENST00000384597 107 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 RNU6-1300P-201ENST00000391046 108 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 MTND1P21-201ENST00000412991 285 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 OOSP1P1-201ENST00000423265 274 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 AL022400.1-201ENST00000423946 935 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 TRIM60P13-201ENST00000432350 1283 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 AC020550.1-201ENST00000447385 163 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 OR6C5P-201ENST00000452388 923 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 snoU13.26-201ENST00000459452 105 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.83□□□□□ -2.28
FOXA3P55318 RPL30P7-201ENST00000479312 323 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.83□□□□□ -2.28
FOXA3P55318 RNU5B-3P-201ENST00000516601 115 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 RNU6-714P-201ENST00000516963 103 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 RNU6-1261P-201ENST00000517194 104 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC0.83□□□□□ -2.28
FOXA3P55318 AC084364.2-201ENST00000546924 395 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 AL161670.1-201ENST00000554348 137 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 ZNF971P-201ENST00000562068 1249 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 RPL30P11-203ENST00000598995 310 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 HSPE1P19-201ENST00000603327 295 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 AC092125.1-201ENST00000562568 1995 ntBASIC0.83□□□□□ -2.28
FOXA3P55318 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
FOXA3P55318 OR5T3-201ENST00000303059 1023 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 RNU6-271P-201ENST00000363858 105 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 RNU6-650P-201ENST00000365658 111 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
FOXA3P55318 AL021407.1-201ENST00000404531 386 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC0.82□□□□□ -2.28
FOXA3P55318 AL158050.1-201ENST00000416077 457 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 ISCA1P1-201ENST00000426679 387 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms