Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 U3.39-201ENST00000408569 239 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AL096701.2-201ENST00000416920 238 ntBASIC3.11□□□□□ -1.91
SOX2P48431 HMGN2P30-201ENST00000423237 256 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 AC009220.1-201ENST00000451614 275 ntBASIC3.11□□□□□ -1.91
SOX2P48431 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.11□□□□□ -1.91
SOX2P48431 Y_RNA.653-201ENST00000459091 95 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SOX2P48431 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.11□□□□□ -1.91
SOX2P48431 AC026333.2-201ENST00000542164 106 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 AL163153.1-201ENST00000554223 283 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.11□□□□□ -1.91
SOX2P48431 AC093249.1-201ENST00000567049 203 ntBASIC3.11□□□□□ -1.91
SOX2P48431 MIR4782-201ENST00000577987 79 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.11□□□□□ -1.91
SOX2P48431 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SOX2P48431 AP000787.2-201ENST00000604432 568 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AC080078.3-201ENST00000605407 463 ntBASIC3.11□□□□□ -1.91
SOX2P48431 AC123912.5-201ENST00000605470 343 ntBASIC3.11□□□□□ -1.91
SOX2P48431 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SOX2P48431 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
SOX2P48431 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
SOX2P48431 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SOX2P48431 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
SOX2P48431 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.11□□□□□ -1.91
SOX2P48431 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.11□□□□□ -1.91
SOX2P48431 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
SOX2P48431 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-37P-201ENST00000362692 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-11P-201ENST00000364234 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-7-201ENST00000364784 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-8-201ENST00000365467 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-25P-201ENST00000383873 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-1-201ENST00000383898 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-48P-201ENST00000384161 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-36P-201ENST00000384172 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-4P-201ENST00000384205 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-5P-201ENST00000384238 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-3P-201ENST00000384314 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-16P-201ENST00000384385 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-1035P-201ENST00000384477 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-15P-201ENST00000384534 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-2-201ENST00000384627 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-29P-201ENST00000384637 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 SNORA1.3-201ENST00000384676 136 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-9-201ENST00000384776 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-33P-201ENST00000384793 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-1106P-201ENST00000390845 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RPS4XP3-201ENST00000398541 413 ntBASIC3.1□□□□□ -1.91
SOX2P48431 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
SOX2P48431 RPL26P27-201ENST00000414397 437 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX2P48431 BX679664.1-201ENST00000434429 253 ntBASIC3.1□□□□□ -1.91
SOX2P48431 HIGD1AP11-201ENST00000438361 280 ntBASIC3.1□□□□□ -1.91
SOX2P48431 HMGB3P8-201ENST00000449709 577 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX2P48431 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX2P48431 RNU7-152P-201ENST00000458982 64 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AC010401.1-201ENST00000463867 348 ntBASIC3.1□□□□□ -1.91
SOX2P48431 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX2P48431 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU1-103P-201ENST00000516502 125 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-579P-201ENST00000516879 102 ntBASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-703P-201ENST00000516946 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.1□□□□□ -1.91
SOX2P48431 HMGB1P14-201ENST00000557424 591 ntBASIC3.1□□□□□ -1.91
SOX2P48431 ANP32BP3-201ENST00000559213 706 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX2P48431 AC087499.8-201ENST00000578406 226 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX2P48431 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX2P48431 RNU6-6P-201ENST00000606623 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AL161423.1-201ENST00000613700 262 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AC133104.2-201ENST00000615272 193 ntBASIC3.1□□□□□ -1.91
SOX2P48431 PISRT1.1-201ENST00000616930 107 ntBASIC3.1□□□□□ -1.91
SOX2P48431 AC098657.3-201ENST00000620434 263 ntBASIC3.1□□□□□ -1.91
SOX2P48431 Z69720.2-201ENST00000624755 279 ntBASIC3.1□□□□□ -1.91
SOX2P48431 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX2P48431 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX2P48431 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SOX2P48431 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX2P48431 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SOX2P48431 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SOX2P48431 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SOX2P48431 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SOX2P48431 Y_RNA.146-201ENST00000363549 102 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RNA5SP283-201ENST00000365604 119 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 133.3 ms