Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-1120P-201ENST00000362988 108 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 RNU6-1167P-201ENST00000363227 94 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 RNU1-101P-201ENST00000391171 127 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AL354719.1-201ENST00000406535 843 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC9P31274 UBE2V1P10-201ENST00000414685 269 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC9P31274 AL591212.2-201ENST00000433923 257 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 RPS12P2-201ENST00000439728 269 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC096638.1-201ENST00000444678 216 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC093392.2-201ENST00000450682 337 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AL135752.1-201ENST00000479477 471 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC092436.1-201ENST00000506450 503 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC009646.1-201ENST00000510455 318 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 RNU6-123P-201ENST00000516163 102 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 RNU6-711P-201ENST00000517255 106 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC9P31274 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXC9P31274 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC9P31274 AL359212.1-201ENST00000556608 614 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC024619.4-201ENST00000580924 316 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC126118.1-201ENST00000607744 628 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXC9P31274 AC034102.8-201ENST00000615146 484 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC9P31274 U6.114-201ENST00000636407 96 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 MTND1P37-201ENST00000636562 264 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 AC090740.1-201ENST00000623193 2262 ntBASIC3.15□□□□□ -1.91
HOXC9P31274 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC9P31274 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HOXC9P31274 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXC9P31274 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC9P31274 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HOXC9P31274 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC9P31274 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXC9P31274 RNU6-1085P-201ENST00000363576 107 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 RNU6-61P-201ENST00000365528 109 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 Y_RNA.554-201ENST00000384672 102 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 MIR454-201ENST00000390180 115 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXC9P31274 RNU6-817P-201ENST00000391083 104 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 MIR548F1-201ENST00000408667 84 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 RNU2-33P-201ENST00000410344 192 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC9P31274 AL592045.1-201ENST00000429867 352 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC9P31274 AC018634.1-201ENST00000437554 401 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC9P31274 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC9P31274 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXC9P31274 AC027673.1-201ENST00000456245 405 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC9P31274 AL160314.1-201ENST00000490836 438 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 RNU6-237P-201ENST00000515985 71 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 SNORD27.1-201ENST00000516319 72 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 Y_RNA.704-201ENST00000516851 102 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 IGHV3-76-201ENST00000522465 295 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 TRAV28-201ENST00000557548 323 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC9P31274 TPRKBP2-201ENST00000565969 475 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 AC022893.3-201ENST00000607665 437 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 AC067747.1-201ENST00000608026 250 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 AP001596.2-201ENST00000608410 312 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 MTND5P42-201ENST00000637720 498 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 API5P2-201ENST00000397055 1498 ntBASIC3.14□□□□□ -1.91
HOXC9P31274 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC9P31274 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC9P31274 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
HOXC9P31274 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC9P31274 MTND5P27-201ENST00000428871 1720 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC9P31274 AL137003.2-201ENST00000606924 2538 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 Y_RNA.245-201ENST00000364493 95 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RNU4-48P-201ENST00000365559 182 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 SNORA41-201ENST00000384675 132 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AL590002.1-201ENST00000406554 418 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 MIR1289-2-201ENST00000408360 111 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RNU6-1077P-201ENST00000410506 102 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 FCF1P9-201ENST00000412546 282 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RPS12P24-201ENST00000412619 387 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC9P31274 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC9P31274 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC9P31274 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC9P31274 TOMM20P4-201ENST00000427861 435 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXC9P31274 RPL36AP6-201ENST00000435770 321 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RPL7P54-201ENST00000438336 674 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC9P31274 Z82210.1-201ENST00000440037 231 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RPL23AP20-201ENST00000447965 421 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC9P31274 AL162395.1-201ENST00000457882 422 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RNU7-182P-201ENST00000459009 62 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RNU7-63P-201ENST00000459054 62 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RPL30P14-201ENST00000482744 348 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RBBP4P6-201ENST00000508098 202 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 MTND4LP22-201ENST00000508209 276 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms