Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC107068.1-201ENST00000563286 4218 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AL672167.1-203ENST00000641299 2975 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RNA5SP197-201ENST00000363357 119 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 Y_RNA.319-201ENST00000365138 92 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 MTHFD2P2-201ENST00000407725 247 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 Y_RNA.625-201ENST00000411256 107 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 ELOCP19-201ENST00000411919 318 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RPL23AP36-201ENST00000413895 458 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 BMS1P22-201ENST00000414726 313 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AC009237.8-201ENST00000445492 379 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RNA5SP103-201ENST00000459503 118 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AC006463.2-201ENST00000473326 348 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AF186996.7-201ENST00000492781 209 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 SNORA40.9-201ENST00000515895 93 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RN7SKP46-201ENST00000515942 234 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RNA5SP446-201ENST00000515955 82 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RNU6-346P-201ENST00000516288 111 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RNU6-567P-201ENST00000516746 107 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AC136601.2-201ENST00000604356 474 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AC005086.4-201ENST00000623065 213 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 CPHL1P-201ENST00000461341 3407 ntBASIC4.78□□□□□ -1.64
USP3Q9Y6I4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.78□□□□□ -1.64
USP3Q9Y6I4 AC090740.1-201ENST00000623193 2262 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 BX322639.1-202ENST00000423987 2213 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RNA5SP151-201ENST00000365632 117 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RNU6-804P-201ENST00000384286 107 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RNU6-1289P-201ENST00000384431 106 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 SNORD96B-201ENST00000386148 79 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RNA5SP44-201ENST00000410446 133 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 POLR2KP2-201ENST00000438155 177 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RPL23AP93-201ENST00000440847 484 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 PTMAP3-201ENST00000447474 330 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 HMGB1P22-201ENST00000505315 124 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 RNU6-703P-201ENST00000516946 107 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 LINC00933-203ENST00000559812 219 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 AC008749.1-201ENST00000597650 306 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 AL078605.1-201ENST00000603529 500 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 IGHVIII-44-202ENST00000636235 289 ntBASIC4.77□□□□□ -1.65
USP3Q9Y6I4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP3Q9Y6I4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 OR51H2P-202ENST00000641424 3046 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 RNA5SP361-201ENST00000362686 118 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 RNU6-626P-201ENST00000363354 107 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 RN7SKP224-201ENST00000364140 325 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 Y_RNA.441-201ENST00000384123 112 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 SNORA40.19-201ENST00000390846 128 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 RPL7AP25-201ENST00000423357 805 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 RPL23AP95-201ENST00000426806 265 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 MTATP6P7-201ENST00000453315 681 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 snoU13.4-201ENST00000458916 104 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 AP001025.1-201ENST00000486139 332 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 SNORA31.8-201ENST00000516327 108 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 SNRPGP15-201ENST00000600149 222 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 AL022322.2-201ENST00000624072 20397 ntBASIC4.76□□□□□ -1.65
USP3Q9Y6I4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP3Q9Y6I4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.75□□□□□ -1.65
USP3Q9Y6I4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP3Q9Y6I4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms