Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP307-201ENST00000362863 116 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 SNORD50.1-201ENST00000362987 71 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNU6-595P-201ENST00000363944 107 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP242-201ENST00000364171 118 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNU1-140P-201ENST00000365040 165 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNU6-639P-201ENST00000384074 107 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 MIR147B-201ENST00000390185 80 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNU6-308P-201ENST00000390957 107 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 U3.25-201ENST00000391209 220 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 HMGN2P8-201ENST00000391458 268 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP44-201ENST00000410446 133 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 MCFD2P1-201ENST00000417812 300 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC008267.5-201ENST00000424928 265 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 ARF4P2-201ENST00000430209 526 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 MTND4P19-201ENST00000446659 478 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC079354.2-201ENST00000453523 154 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 FTH1P2-201ENST00000466086 412 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RNU5B-3P-201ENST00000516601 115 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 EDDM3DP-201ENST00000554692 434 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RPL23AP97-201ENST00000568955 471 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 MIR4330-201ENST00000579077 105 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AL158827.2-201ENST00000602494 330 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AL512329.2-201ENST00000607350 548 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 AL691447.3-201ENST00000635020 330 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RBBP8P1-201ENST00000449447 1844 ntBASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
CLRN3Q8NCR9 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 Y_RNA.48-201ENST00000362710 103 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP234-201ENST00000363916 119 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 Y_RNA.216-201ENST00000364205 93 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RNU6-700P-201ENST00000391043 107 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP354-201ENST00000391247 136 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RPL7P2-201ENST00000427639 268 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AL513124.1-201ENST00000450410 614 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RN7SKP210-201ENST00000459176 261 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RN7SL330P-201ENST00000469709 307 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 SNORA25.10-201ENST00000515926 124 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 RNU7-4P-201ENST00000516961 62 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC009812.2-201ENST00000517657 457 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 IGKV2-18-201ENST00000522607 343 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC016256.1-201ENST00000547971 354 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC090897.2-201ENST00000581715 130 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AL391813.1-201ENST00000603098 260 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AL355877.2-201ENST00000603670 358 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC040896.1-201ENST00000613819 479 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 AC007496.3-201ENST00000624987 3443 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 MAPK10-263ENST00000641052 4307 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 MTND5P1-201ENST00000445440 1375 ntBASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CLRN3Q8NCR9 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 SNORA74A-201ENST00000364089 198 ntBASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP139-201ENST00000364340 117 ntBASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 RNU6-1141P-201ENST00000364520 107 ntBASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CLRN3Q8NCR9 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms