Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 AC107068.1-201ENST00000563286 4218 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 DEFB108F-201ENST00000344638 222 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 RNA5SP171-201ENST00000391071 115 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 RAB9AP3-201ENST00000412737 573 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 AL138785.1-201ENST00000425821 331 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 RPL12P18-201ENST00000437175 325 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 AL078601.1-201ENST00000444542 271 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 RAB9AP1-201ENST00000449393 573 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 SSXP4-201ENST00000451349 245 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 SNORD2.1-201ENST00000458762 69 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 MLLT10P2-201ENST00000506434 249 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 SNORA31.9-201ENST00000516429 84 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 MIR4308-201ENST00000580634 81 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 RPL7P50-201ENST00000600588 727 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 AL445567.2-201ENST00000618935 498 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.25□□□□□ -1.57
SH3RF1Q7Z6J0 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AL031595.2-201ENST00000624215 19071 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AL365440.1-201ENST00000436135 2167 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-626P-201ENST00000363354 107 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-1325P-201ENST00000364905 105 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RNA5SP151-201ENST00000365632 117 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-449P-201ENST00000383914 107 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 EIF4A1P3-201ENST00000411521 244 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 EIF1AXP1-201ENST00000419267 435 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 IFNWP4-201ENST00000453148 294 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AC092798.1-201ENST00000458542 409 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 SRI-210ENST00000490437 570 ntTSL 2 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AC010265.1-201ENST00000513509 211 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RN7SKP49-201ENST00000516675 260 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-572P-201ENST00000516724 80 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 IGLVIV-65-201ENST00000517313 360 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AC091979.2-201ENST00000607514 214 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AC005296.1-201ENST00000616145 209 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AC027309.3-201ENST00000623419 351 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 SCARNA4-202ENST00000625402 129 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 RNA5SP196-201ENST00000625967 102 ntBASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC5.24□□□□□ -1.57
SH3RF1Q7Z6J0 AC100821.1-201ENST00000523153 2479 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AL079305.1-201ENST00000623159 3008 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RNA5SP361-201ENST00000362686 118 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-78P-201ENST00000362897 107 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-1255P-201ENST00000363434 112 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.230-201ENST00000364348 109 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-166P-201ENST00000384371 107 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.570-201ENST00000384750 101 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 MIR195-201ENST00000385194 87 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 SNORA40.19-201ENST00000390846 128 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RNA5SP296-201ENST00000410523 111 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RPL7AP25-201ENST00000423357 805 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 UQCRBP2-201ENST00000447827 297 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 ANP32BP2-201ENST00000454525 545 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RPL21P126-201ENST00000470049 478 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 SCARNA15.2-201ENST00000516409 127 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 RPL21P9-201ENST00000556149 474 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC112693.2-201ENST00000556538 232 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC093591.2-201ENST00000565254 3843 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AC023043.4-201ENST00000612081 449 ntBASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SH3RF1Q7Z6J0 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms