Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MIR148B-201ENST00000362252 99 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 RNA5SP374-201ENST00000362939 125 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 U3.6-201ENST00000363622 211 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 XGY1-201ENST00000381172 446 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.530-201ENST00000384587 101 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 MIR514A1-201ENST00000385133 98 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 UBE2V1P2-201ENST00000397758 440 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 RN7SKP140-201ENST00000411196 284 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC020550.1-201ENST00000447385 163 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 RNU6-1208P-201ENST00000459588 107 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 RN7SL863P-201ENST00000462370 296 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 RPL30P5-201ENST00000494923 336 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.654-201ENST00000497848 106 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 SCARNA15.2-201ENST00000516409 127 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.691-201ENST00000516611 103 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AL591516.1-201ENST00000611326 274 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC012409.4-201ENST00000612923 249 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 MTND4P23-201ENST00000447723 1363 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 RNU4-79P-201ENST00000362764 141 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.460-201ENST00000384255 102 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 RNU6-831P-201ENST00000384548 107 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 SNORA11.1-201ENST00000408133 129 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC016831.2-201ENST00000417179 352 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 HSPE1P1-201ENST00000421494 318 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 RN7SL807P-201ENST00000470923 297 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC109925.1-201ENST00000478069 331 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 CCDC34P1-201ENST00000507441 517 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 TTC39CP1-201ENST00000512513 755 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 SNORA31.1-201ENST00000515993 133 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 SNORA31.3-201ENST00000516029 96 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 SNORA31.5-201ENST00000516190 133 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 RN7SKP258-201ENST00000517151 304 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 RNU6-711P-201ENST00000517255 106 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 SCOCP1-201ENST00000554676 349 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AL118558.2-201ENST00000556294 238 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 MIR5004-201ENST00000579078 107 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC104763.2-201ENST00000604179 382 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC092807.2-201ENST00000609367 243 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 RMST_7.1-201ENST00000621935 268 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 AC018692.3-201ENST00000623929 123 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS53Q5VIR6 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.78□□□□□ -1.8
VPS53Q5VIR6 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.167-201ENST00000363735 109 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 EI24P2-201ENST00000397776 1076 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 USP9YP20-201ENST00000419224 558 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 HIGD1AP11-201ENST00000438361 280 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 RPS12P18-201ENST00000442381 270 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 NEFMP1-201ENST00000443423 1006 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AC009237.8-201ENST00000445492 379 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 RBBP4P6-201ENST00000508098 202 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 RNU6-277P-201ENST00000516272 106 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AL355836.1-201ENST00000555951 870 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AC005498.1-201ENST00000592125 465 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AL138880.2-201ENST00000616214 239 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 AC009487.2-201ENST00000420969 6821 ntBASIC3.77□□□□□ -1.81
VPS53Q5VIR6 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS53Q5VIR6 OR4G2P-202ENST00000641004 1759 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS53Q5VIR6 SNORA38.1-201ENST00000364172 131 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.373-201ENST00000365600 103 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.378-201ENST00000365652 113 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.414-201ENST00000384011 101 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 SNORA7.4-201ENST00000384249 137 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 RNU6-817P-201ENST00000391083 104 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 RNA5SP38-201ENST00000410750 119 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 NDUFB4P5-201ENST00000415445 361 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 AL451054.2-201ENST00000420896 202 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 RPL23AP69-201ENST00000431134 458 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS53Q5VIR6 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS53Q5VIR6 AC006028.1-201ENST00000438379 402 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 HMGB1P18-201ENST00000438801 619 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 RNU7-66P-201ENST00000459469 62 ntBASIC3.76□□□□□ -1.81
VPS53Q5VIR6 TRBV1-201ENST00000476502 284 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms