Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 GPM6BP2-201ENST00000432046 144 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 RPL36AP53-201ENST00000432891 316 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 CR769776.1-201ENST00000441254 787 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 GPM6BP1-201ENST00000446387 144 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 FABP5P15-201ENST00000453566 214 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 RPF2P2-201ENST00000504693 896 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AC023141.11-201ENST00000508864 202 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 SNORA31.6-201ENST00000516241 130 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 RNU6-250P-201ENST00000516958 103 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA1P55317 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC024619.4-201ENST00000580924 316 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC009977.1-201ENST00000586015 570 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC025588.2-201ENST00000604851 466 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 DUSP12P1-201ENST00000612874 516 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AL353997.5-201ENST00000618886 171 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AL607023.1-201ENST00000620045 248 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AL078595.3-201ENST00000623815 1166 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
FOXA1P55317 AC010329.5-201ENST00000623497 2174 ntBASIC1.59□□□□□ -2.16
FOXA1P55317 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
FOXA1P55317 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
FOXA1P55317 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.59□□□□□ -2.16
FOXA1P55317 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
FOXA1P55317 ZNF876P-202ENST00000398732 1485 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA1P55317 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA1P55317 RNU6-1284P-201ENST00000363701 100 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 RNU6-1083P-201ENST00000384022 107 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 RNU6-278P-201ENST00000390945 109 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AL021407.1-201ENST00000404531 386 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 NDUFS5P1-201ENST00000405668 289 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 RNU6-920P-201ENST00000410926 92 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AC078974.1-201ENST00000411597 223 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA1P55317 ISCA1P1-201ENST00000426679 387 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AC104651.1-201ENST00000427559 735 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA1P55317 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 BZW1P2-201ENST00000473537 826 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 SNORA31.3-201ENST00000516029 96 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 RNU5A-4P-201ENST00000516588 111 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA1P55317 AC084851.1-201ENST00000529105 249 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 CBX3P4-201ENST00000538909 354 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA1P55317 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA1P55317 AC007151.1-201ENST00000572774 483 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AC010928.2-201ENST00000588017 287 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA1P55317 AC005261.5-201ENST00000596280 355 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 BNIP3P39-201ENST00000601077 554 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AL391813.1-201ENST00000603098 260 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AL450336.1-201ENST00000605180 586 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 AC013244.3-201ENST00000605614 388 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 SNORD14A-201ENST00000606526 91 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 MIR6845-201ENST00000613182 61 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 OR4G3P-201ENST00000633500 913 ntBASIC1.58□□□□□ -2.16
FOXA1P55317 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA1P55317 ADAM3A-203ENST00000461344 2157 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 RNU6-658P-201ENST00000384606 106 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
FOXA1P55317 RNU6-220P-201ENST00000390919 107 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.57□□□□□ -2.16
FOXA1P55317 AL008987.1-201ENST00000415528 237 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AL022400.1-201ENST00000423946 935 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AL353729.1-201ENST00000425044 720 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 HMGB1P27-201ENST00000431429 603 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA1P55317 TIMM9P1-201ENST00000436122 256 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 OR6C5P-201ENST00000452388 923 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC108059.3-201ENST00000456388 214 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC139453.3-201ENST00000493276 369 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.57□□□□□ -2.16
FOXA1P55317 RNU6-295P-201ENST00000516901 104 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms