Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MTND1P17-201ENST00000448961 204 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD9P28356 RPS23P3-201ENST00000470993 430 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD9P28356 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD9P28356 RPL39P5-202ENST00000512505 151 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 RN7SKP258-201ENST00000517151 304 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.37□□□□□ -1.87
HOXD9P28356 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD9P28356 APOOP3-201ENST00000536787 586 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD9P28356 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD9P28356 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD9P28356 AC007151.1-201ENST00000572774 483 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 MIR4790-201ENST00000577799 79 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 MIR4425-201ENST00000580572 84 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD9P28356 AL627309.6-201ENST00000606857 840 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 AL138726.1-201ENST00000614873 333 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD9P28356 AL359547.2-201ENST00000615810 418 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXD9P28356 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD9P28356 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.37□□□□□ -1.87
HOXD9P28356 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXD9P28356 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD9P28356 AF117829.1-206ENST00000621883 3802 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
HOXD9P28356 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD9P28356 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD9P28356 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD9P28356 MIR369-201ENST00000362155 70 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNA5SP374-201ENST00000362939 125 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-1252P-201ENST00000363054 104 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 Y_RNA.187-201ENST00000363918 113 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 SNORA63C-201ENST00000364578 129 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-76P-201ENST00000384060 104 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-434P-201ENST00000384376 107 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-393P-201ENST00000384475 107 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 MIR606-201ENST00000384851 96 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 SNORA16.2-201ENST00000390991 127 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AL139397.2-201ENST00000404529 772 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 MIR1183-201ENST00000408856 89 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-55P-201ENST00000411092 107 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-954P-201ENST00000411355 107 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 ATG3P1-201ENST00000419507 911 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 SKA2P1-201ENST00000425592 390 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD9P28356 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC006028.1-201ENST00000438379 402 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 CYCSP32-201ENST00000440548 321 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU7-167P-201ENST00000459160 62 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC130509.1-201ENST00000464158 433 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 DYNLL1P5-201ENST00000467158 270 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC079140.5-201ENST00000507882 310 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD9P28356 RN7SKP24-201ENST00000515888 284 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RNU6-390P-201ENST00000516259 103 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 Y_RNA.689-201ENST00000516589 107 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 RN7SKP60-201ENST00000516985 239 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXD9P28356 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 COPS8P3-201ENST00000526024 482 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC106782.4-201ENST00000568264 210 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 MIR3941-201ENST00000582572 103 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC106900.2-201ENST00000604994 317 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AL670379.4-201ENST00000605279 254 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC080078.3-201ENST00000605407 463 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC007619.2-201ENST00000605743 379 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AC116312.1-201ENST00000606841 314 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 AL157817.1-201ENST00000614264 790 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 SDR42E1P2-201ENST00000614861 481 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC098657.3-201ENST00000620434 263 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD9P28356 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD9P28356 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
HOXD9P28356 AC010733.2-201ENST00000589496 5702 ntBASIC3.36□□□□□ -1.87
HOXD9P28356 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD9P28356 MIR423-201ENST00000362201 94 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 Y_RNA.202-201ENST00000364083 110 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD9P28356 Y_RNA.482-201ENST00000384377 111 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 RNA5SP219-201ENST00000390940 113 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 RNU6-817P-201ENST00000391083 104 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 SNORA75.4-201ENST00000391278 119 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 RNU4-47P-201ENST00000410876 114 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AL669831.1-202ENST00000428504 417 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD9P28356 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms