Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC239868.2-201ENST00000564237 4527 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 AC138915.1-201ENST00000565427 1685 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 SNX18P3-202ENST00000565670 1750 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL9A1P20849 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL9A1P20849 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL9A1P20849 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC5.35□□□□□ -1.55
COL9A1P20849 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.35□□□□□ -1.55
COL9A1P20849 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 SNORA20B-201ENST00000384220 132 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 SNORA79-201ENST00000408376 140 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 RNU4-64P-201ENST00000410795 131 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 OR2AH1P-201ENST00000425717 928 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 AC009237.8-201ENST00000445492 379 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 SNORA74D-201ENST00000516404 141 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 RNU6-107P-201ENST00000516643 102 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.35□□□□□ -1.55
COL9A1P20849 RN7SL356P-201ENST00000582228 248 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 AL591926.8-201ENST00000616876 211 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 CR381572.2-201ENST00000624852 397 ntBASIC5.35□□□□□ -1.55
COL9A1P20849 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL9A1P20849 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
COL9A1P20849 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.35□□□□□ -1.55
COL9A1P20849 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL9A1P20849 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL9A1P20849 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
COL9A1P20849 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.34□□□□□ -1.55
COL9A1P20849 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL9A1P20849 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL9A1P20849 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.34□□□□□ -1.55
COL9A1P20849 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL9A1P20849 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL9A1P20849 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
COL9A1P20849 Y_RNA.114-201ENST00000363265 113 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 RNU6-294P-201ENST00000364999 102 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 Y_RNA.310-201ENST00000365063 113 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 SNORD58C-201ENST00000365223 64 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 RNU1-100P-201ENST00000365255 165 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 SNORD56.6-201ENST00000384569 71 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC5.34□□□□□ -1.55
COL9A1P20849 AC125238.1-201ENST00000448842 249 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC5.34□□□□□ -1.55
COL9A1P20849 MIR378D2-201ENST00000580636 98 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.34□□□□□ -1.55
COL9A1P20849 AC120024.3-201ENST00000603167 156 ntBASIC5.34□□□□□ -1.55
COL9A1P20849 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.34□□□□□ -1.55
COL9A1P20849 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.34□□□□□ -1.55
COL9A1P20849 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL9A1P20849 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.34□□□□□ -1.55
COL9A1P20849 AC022336.2-201ENST00000568966 2538 ntBASIC5.34□□□□□ -1.56
COL9A1P20849 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL9A1P20849 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.34□□□□□ -1.56
COL9A1P20849 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
COL9A1P20849 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
COL9A1P20849 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
COL9A1P20849 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.33□□□□□ -1.56
COL9A1P20849 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 SNORA63.1-201ENST00000362493 131 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 U3.3-201ENST00000362986 216 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 Y_RNA.243-201ENST00000364481 109 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 PTMAP2-201ENST00000397627 327 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL9A1P20849 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.33□□□□□ -1.56
COL9A1P20849 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.33□□□□□ -1.56
COL9A1P20849 RN7SL188P-201ENST00000469842 285 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 RNU1-103P-201ENST00000516502 125 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 RNU6-638P-201ENST00000516582 104 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 SNORA31.23-201ENST00000517219 133 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 AP003327.1-201ENST00000529684 127 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 MIR4420-201ENST00000583944 77 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 AC069200.1-201ENST00000609511 323 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 MIR6134-201ENST00000617606 109 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 AL139811.1-201ENST00000424779 2299 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL9A1P20849 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.33□□□□□ -1.56
COL9A1P20849 AC006206.1-201ENST00000544842 3387 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 AC018555.1-201ENST00000567548 1980 ntBASIC5.33□□□□□ -1.56
COL9A1P20849 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL9A1P20849 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms