Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CLDN9O95484 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CLDN9O95484 U6atac.2-201ENST00000408644 118 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC092809.3-201ENST00000415453 231 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 RPL23AP39-201ENST00000415533 405 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC098592.1-201ENST00000419352 333 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 RPS15AP12-201ENST00000419498 388 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC005005.2-201ENST00000420779 380 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 HMGB3P12-201ENST00000438745 556 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.11□□□□□ -2.07
CLDN9O95484 AC118469.1-201ENST00000442943 488 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 Z73417.1-201ENST00000447373 778 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.11□□□□□ -2.07
CLDN9O95484 AC093899.1-201ENST00000457984 376 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 SNORD11.1-201ENST00000459482 85 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC109486.1-201ENST00000486833 374 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC023194.1-201ENST00000493084 308 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 RNU6-1092P-201ENST00000516955 87 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 ACA59.2-201ENST00000517061 156 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 CBX3P7-201ENST00000532876 502 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 ZNF519P3-201ENST00000557158 1032 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.11□□□□□ -2.07
CLDN9O95484 ISCA1P3-201ENST00000577104 373 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CLDN9O95484 SNORD53-201ENST00000579969 78 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 LRRC37A5P-203ENST00000580181 585 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 AC245884.12-201ENST00000615364 59 ntBASIC2.11□□□□□ -2.07
CLDN9O95484 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN9O95484 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CLDN9O95484 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
CLDN9O95484 RNU5E-6P-201ENST00000365574 115 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 RNU4-72P-201ENST00000410754 173 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 RPS24P7-201ENST00000416921 246 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 RPL22P18-201ENST00000417197 377 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN9O95484 AC013410.2-201ENST00000422627 201 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CLDN9O95484 EIF4EP4-201ENST00000424916 578 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN9O95484 UBE2D3P1-201ENST00000436669 444 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN9O95484 AL606662.1-201ENST00000445763 553 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC104058.1-201ENST00000448028 297 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 BTF3P15-201ENST00000455606 336 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AL139824.2-201ENST00000458731 1095 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 snoU13.15-201ENST00000459407 104 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC011005.2-201ENST00000487324 359 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 RPL22P13-201ENST00000493291 347 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC116655.1-201ENST00000508324 901 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN9O95484 RNU6-914P-201ENST00000516749 109 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 RNU6-1315P-201ENST00000517187 99 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AL133241.1-201ENST00000556832 487 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN9O95484 AL121917.1-203ENST00000605534 577 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC103710.2-201ENST00000609912 942 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AL356266.1-201ENST00000623311 483 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC091953.2-201ENST00000623979 160 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC064859.1-201ENST00000624741 174 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 AC092192.1-201ENST00000633154 1018 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 Z75746.1-201ENST00000440243 2080 ntBASIC2.1□□□□□ -2.07
CLDN9O95484 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
CLDN9O95484 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 TEX21P-201ENST00000447107 1476 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 RNU1-91P-201ENST00000364746 163 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 RNU6-946P-201ENST00000383878 107 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 Y_RNA.534-201ENST00000384599 112 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 BTF3P7-201ENST00000407097 488 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 RNU6-1025P-201ENST00000410629 104 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN9O95484 MTND1P23-201ENST00000416931 372 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 USP9YP27-201ENST00000418455 438 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 MORF4L1P6-201ENST00000418771 268 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 RPS3AP44-201ENST00000425466 790 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AL078601.1-201ENST00000444542 271 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.09□□□□□ -2.07
CLDN9O95484 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN9O95484 RPL36AP48-201ENST00000485521 314 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 RNU6-548P-201ENST00000517083 115 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AP003461.1-201ENST00000528866 78 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN9O95484 ELOCP32-201ENST00000548625 324 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 SNRPGP18-201ENST00000553000 214 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN9O95484 LINC00933-203ENST00000559812 219 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.09□□□□□ -2.07
CLDN9O95484 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.09□□□□□ -2.07
CLDN9O95484 AC034229.4-201ENST00000607861 441 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AC024933.1-201ENST00000608472 348 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 MIR6840-201ENST00000611937 71 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
CLDN9O95484 AC068787.1-201ENST00000623908 691 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 AC007671.2-201ENST00000637344 619 ntBASIC2.09□□□□□ -2.07
CLDN9O95484 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.09□□□□□ -2.08
CLDN9O95484 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CLDN9O95484 SNORA4.3-201ENST00000365564 137 ntBASIC2.08□□□□□ -2.08
CLDN9O95484 RNU6-533P-201ENST00000384144 107 ntBASIC2.08□□□□□ -2.08
CLDN9O95484 SNORA3.2-201ENST00000408221 125 ntBASIC2.08□□□□□ -2.08
CLDN9O95484 RNU4-53P-201ENST00000410828 140 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms