Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC005005.4-201ENST00000623789 16698 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC083843.3-201ENST00000623679 2186 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC104260.2-201ENST00000623551 3497 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RNU1-32P-201ENST00000363937 159 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RNU6-629P-201ENST00000384061 103 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RNU6-1181P-201ENST00000384191 106 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RNU6-1117P-201ENST00000384525 104 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 Y_RNA.570-201ENST00000384750 101 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 MIR659-201ENST00000384963 97 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RNA5SP31-201ENST00000411144 127 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 DNAJC19P7-201ENST00000428811 344 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 SNRPEP9-201ENST00000436794 238 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 Z82210.1-201ENST00000440037 231 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RPS26P2-201ENST00000440331 348 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 SNORD2.1-201ENST00000458762 69 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 snoU109.2-201ENST00000459316 135 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC087477.1-201ENST00000465747 340 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RPL26P26-201ENST00000480251 434 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 RN7SL459P-201ENST00000481078 302 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC091959.1-201ENST00000495857 238 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC022559.1-201ENST00000520905 205 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 MIR5096-201ENST00000583713 70 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC008725.1-201ENST00000605123 2263 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.81□□□□□ -1.64
USP3Q9Y6I4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP3Q9Y6I4 AL031595.2-201ENST00000624215 19071 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 RNA5SP443-201ENST00000363083 132 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 RNU4-30P-201ENST00000410245 143 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 FAR2P2-201ENST00000413041 594 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 NUTF2P3-201ENST00000448540 384 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 NUTF2P7-201ENST00000453086 375 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AC010285.1-201ENST00000470580 392 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 RN7SL346P-201ENST00000491561 294 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 RNU6-513P-201ENST00000516104 104 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AC107016.1-201ENST00000550463 337 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 ZNF192P1-203ENST00000565888 810 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 MIR4715-201ENST00000584117 79 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AL138963.2-201ENST00000605137 226 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 U6.99-201ENST00000637524 83 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 AC008568.2-201ENST00000623862 2313 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 PCAT14-202ENST00000627127 3935 ntBASIC4.8□□□□□ -1.64
USP3Q9Y6I4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
USP3Q9Y6I4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 RAD17P1-201ENST00000418130 2042 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 RNU5F-3P-201ENST00000363767 117 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 MIR921-201ENST00000401133 56 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 RN7SKP216-201ENST00000411050 312 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC068287.1-201ENST00000430283 295 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 snoU13.24-201ENST00000458998 104 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 snoU13.1-201ENST00000459157 104 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AL049830.2-201ENST00000480072 201 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AL590392.1-201ENST00000604960 446 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC005296.1-201ENST00000616145 209 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 AC024581.2-201ENST00000619986 252 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 MIR7641-1-201ENST00000627518 61 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 MTND1P7-201ENST00000632801 297 ntBASIC4.79□□□□□ -1.64
USP3Q9Y6I4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.79□□□□□ -1.64
USP3Q9Y6I4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms