Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AC006483.1-201ENST00000487308 313 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RPL38P4-201ENST00000502376 214 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AC117522.3-201ENST00000507974 584 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 HIGD1AP13-201ENST00000509878 289 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RNU4-29P-201ENST00000515943 174 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 SNORA31.3-201ENST00000516029 96 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RNU6-123P-201ENST00000516163 102 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AC106782.4-201ENST00000568264 210 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AL365204.3-201ENST00000612448 685 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AC007998.5-201ENST00000622938 237 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 AL137790.1-201ENST00000634283 177 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 GABRG2-229ENST00000641017 3628 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 SDAD1P2-201ENST00000441308 2028 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 DEFB108F-201ENST00000344638 222 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU6-1287P-201ENST00000362914 107 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU6-288P-201ENST00000363690 104 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 Y_RNA.279-201ENST00000364763 95 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU6-1060P-201ENST00000384664 107 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU6-550P-201ENST00000391057 101 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AL139397.2-201ENST00000404529 772 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNA5SP118-201ENST00000410385 109 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU2-29P-201ENST00000410423 189 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RPL7P46-201ENST00000425129 740 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 MTND3P16-201ENST00000452205 344 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU7-180P-201ENST00000459240 63 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AC008628.2-201ENST00000502605 298 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 MTCO3P9-201ENST00000506989 781 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AC114786.4-201ENST00000508771 728 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 SNORA31.8-201ENST00000516327 108 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNU6-685P-201ENST00000517088 95 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AC130324.3-201ENST00000614165 542 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AC100810.6-201ENST00000638068 285 ntBASIC3.09□□□□□ -1.91
SIX4Q9UIU6 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.91
SIX4Q9UIU6 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.09□□□□□ -1.92
SIX4Q9UIU6 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.09□□□□□ -1.92
SIX4Q9UIU6 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 Y_RNA.157-201ENST00000363638 102 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 RNU6-525P-201ENST00000363685 104 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 SNORA80A-201ENST00000363922 136 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 Y_RNA.231-201ENST00000364358 102 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 MIR514A2-201ENST00000385131 88 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 MIR514A3-201ENST00000385132 88 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 RNU6-332P-201ENST00000391193 108 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AL606923.1-201ENST00000406616 190 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 RN7SKP58-201ENST00000411010 305 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 USP9YP8-201ENST00000441913 500 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 NIPA2P5-201ENST00000452282 464 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC097462.2-201ENST00000504623 481 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC114781.4-201ENST00000513707 639 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 SNORA70.16-201ENST00000516390 95 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 Y_RNA.689-201ENST00000516589 107 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 SCARNA13-201ENST00000516672 275 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 MIR4424-201ENST00000585257 86 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC024153.1-201ENST00000603103 365 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC104763.2-201ENST00000604179 382 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AL137843.1-201ENST00000605078 385 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AL158032.1-201ENST00000605401 106 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC009994.1-201ENST00000606889 253 ntBASIC3.08□□□□□ -1.92
SIX4Q9UIU6 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.08□□□□□ -1.92
SIX4Q9UIU6 AC090617.10-201ENST00000624308 134 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms