Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL356596.1-201ENST00000624230 379 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC092608.2-201ENST00000624427 218 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC138393.1-203ENST00000327086 343 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-859P-201ENST00000362728 107 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL360182.1-201ENST00000397433 468 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 RNU2-62P-201ENST00000410868 191 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL035407.1-201ENST00000429211 571 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 LARP1BP3-201ENST00000437229 869 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 RPS15AP9-201ENST00000439856 381 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 SNORD109B-201ENST00000458961 67 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 SNORD109A-201ENST00000459128 67 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC105313.1-201ENST00000509121 353 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC096725.1-201ENST00000514266 313 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC079600.2-201ENST00000550076 130 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 LINC00933-203ENST00000559812 219 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC027176.1-201ENST00000560204 514 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 MIR544B-201ENST00000582372 78 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 PIGPP4-201ENST00000584447 307 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC007229.1-201ENST00000590455 412 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 KC877982.1-201ENST00000602313 470 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC104763.2-201ENST00000604179 382 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL355297.2-201ENST00000604792 129 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL031667.3-201ENST00000620124 655 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 AC092192.1-201ENST00000633154 1018 ntBASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.36□□□□□ -2.03
ZNF540Q8NDQ6 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 SNORA18.3-201ENST00000384122 132 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 RNU5A-2P-201ENST00000384337 116 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL139039.1-201ENST00000401900 692 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL138827.1-201ENST00000402666 306 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 RNA5SP21-201ENST00000410917 96 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 ELOCP17-201ENST00000414751 326 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 RPLP0P7-201ENST00000416050 667 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 USP9YP20-201ENST00000419224 558 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL445669.1-201ENST00000426743 755 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL353706.1-201ENST00000436728 494 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AC011816.1-201ENST00000441346 546 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 GPM6BP3-201ENST00000442797 145 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AL109933.2-201ENST00000452651 260 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 RPL30P6-201ENST00000475925 342 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 SMURF2P1-201ENST00000514992 481 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-581P-201ENST00000516214 105 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 ACA59.2-201ENST00000517061 156 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 CKS1BP7-201ENST00000522230 235 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 CBX3P7-201ENST00000532876 502 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AC012213.3-201ENST00000577199 777 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 MIR4529-201ENST00000578110 78 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AP001981.2-201ENST00000603241 418 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AC091965.4-201ENST00000607691 587 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 AC009090.3-201ENST00000616553 565 ntBASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
ZNF540Q8NDQ6 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AL596028.1-201ENST00000326971 197 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RPL21P132-201ENST00000331267 462 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 OR56A5-201ENST00000340110 738 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 MIR449A-201ENST00000362113 91 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-188P-201ENST00000364207 107 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-660P-201ENST00000364566 109 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms