Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-1301P-201ENST00000362724 104 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 RNU4-90P-201ENST00000362773 141 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 MIR192-201ENST00000384915 110 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 MIR129-1-201ENST00000384972 72 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AL079342.1-201ENST00000401460 267 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 EIF1AXP1-201ENST00000419267 435 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 RNU7-120P-201ENST00000459334 63 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 COX6CP14-201ENST00000469580 174 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 RPL31P13-201ENST00000484151 370 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AL132838.2-201ENST00000492041 314 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC108022.1-201ENST00000493466 478 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-496P-201ENST00000516145 99 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 CBX3P4-201ENST00000538909 354 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 uc_338.18-201ENST00000615451 175 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC233981.2-201ENST00000611524 1614 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AC008568.2-201ENST00000623862 2313 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 AL592182.3-201ENST00000642132 3304 ntBASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
UBE3DQ7Z6J8 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-545P-201ENST00000362681 104 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RNA5SP307-201ENST00000362863 116 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-105P-201ENST00000363909 104 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-17P-201ENST00000384245 107 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-18P-201ENST00000384527 107 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 MIR124-3-201ENST00000384866 87 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 PCNPP3-201ENST00000393579 471 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AL033519.2-201ENST00000403958 392 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 TMSB10P2-201ENST00000416049 131 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RPL17P36-201ENST00000420302 549 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 OR4C10P-201ENST00000434991 931 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 Z82210.1-201ENST00000440037 231 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 snoU13.4-201ENST00000458916 104 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RPL21P126-201ENST00000470049 478 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RPS29P22-201ENST00000472363 168 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 RPL23AP65-201ENST00000475608 468 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 KC877373.1-201ENST00000479066 408 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 SEPT14P8-201ENST00000508026 178 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 SNORA31.8-201ENST00000516327 108 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 SNORA25.14-201ENST00000516481 132 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AC091979.2-201ENST00000607514 214 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AC131238.1-201ENST00000617135 328 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 AP000346.3-201ENST00000622821 210 ntBASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
UBE3DQ7Z6J8 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
UBE3DQ7Z6J8 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
UBE3DQ7Z6J8 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.21□□□□□ -1.73
UBE3DQ7Z6J8 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.73
UBE3DQ7Z6J8 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.73
UBE3DQ7Z6J8 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
UBE3DQ7Z6J8 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 Y_RNA.16-201ENST00000362421 102 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 SNORD113-8-201ENST00000363497 74 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 RNU1-44P-201ENST00000384453 163 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 SNORA74C-2-201ENST00000411179 201 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 RPS26P21-201ENST00000475397 348 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 RNA5SP497-201ENST00000516081 97 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 AP004607.1-201ENST00000524456 203 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 AC016256.1-201ENST00000547971 354 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 RPL23AP97-201ENST00000568955 471 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 MIR4659A-201ENST00000580269 81 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 AC053481.4-201ENST00000583164 216 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 AC024153.1-201ENST00000603103 365 ntBASIC4.21□□□□□ -1.74
UBE3DQ7Z6J8 Z83818.1-201ENST00000603584 150 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms