Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC025165.5-201ENST00000602802 578 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AL158032.1-201ENST00000605401 106 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 RNU6-552P-201ENST00000362869 119 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 RNY4P14-201ENST00000363656 96 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 SNORA4.3-201ENST00000365564 137 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.554-201ENST00000384672 102 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 RNU6-780P-201ENST00000391030 104 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 CISD1P1-201ENST00000393907 327 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 MIR887-201ENST00000401258 79 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AL513477.1-202ENST00000417061 214 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 SRIP2-201ENST00000428470 166 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC104058.1-201ENST00000448028 297 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 Z99127.3-201ENST00000448158 395 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AL118520.1-201ENST00000450770 291 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 CACYBPP2-201ENST00000453625 678 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC008885.1-201ENST00000514930 301 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 SNORD59.2-201ENST00000516873 68 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 RNU6-703P-201ENST00000516946 107 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC107934.2-201ENST00000518653 310 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC104027.1-201ENST00000521887 300 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 BNIP3P30-201ENST00000601184 574 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AL162413.1-201ENST00000603198 110 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AL138889.2-201ENST00000603883 242 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC073308.1-201ENST00000623696 305 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AL356274.2-201ENST00000624379 3752 ntBASIC3.1□□□□□ -1.91
COL28A1Q2UY09 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL28A1Q2UY09 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 SNORD56.3-201ENST00000363507 71 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 RNU6-395P-201ENST00000365662 106 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.402-201ENST00000383972 102 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.450-201ENST00000384198 113 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 RNU6-903P-201ENST00000391270 109 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL591416.1-201ENST00000404015 867 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 EEF1A1P40-201ENST00000412883 573 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC003685.2-201ENST00000422795 395 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 HIGD1AP11-201ENST00000438361 280 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL714022.1-201ENST00000439897 151 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 BRK1P2-201ENST00000442875 223 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 MTATP6P7-201ENST00000453315 681 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 RPL12P25-201ENST00000455592 494 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 TRBV1-201ENST00000476502 284 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC233702.1-201ENST00000482905 502 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC010265.1-201ENST00000513509 211 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.676-201ENST00000516393 96 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 RNU6-711P-201ENST00000517255 106 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC009812.2-201ENST00000517657 457 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC245166.1-201ENST00000521012 253 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 H3F3AP1-201ENST00000559984 334 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 MIR4506-201ENST00000584693 77 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL355598.1-201ENST00000604169 202 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 U6atac.1-201ENST00000616025 117 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AL354950.2-201ENST00000617939 290 ntBASIC3.09□□□□□ -1.91
COL28A1Q2UY09 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.91
COL28A1Q2UY09 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.09□□□□□ -1.92
COL28A1Q2UY09 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
COL28A1Q2UY09 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
COL28A1Q2UY09 CKAP2P1-201ENST00000555477 2049 ntBASIC3.09□□□□□ -1.92
COL28A1Q2UY09 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 MTND5P7-201ENST00000413558 1798 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AC008264.2-201ENST00000610193 3731 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 RNU6-778P-201ENST00000363269 103 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 SNORA14A-201ENST00000364773 135 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 SNORA69-201ENST00000383895 132 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 MIR504-201ENST00000385065 83 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 RNA5SP252-201ENST00000391131 119 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 RPL26P27-201ENST00000414397 437 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms