Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AL672167.1-203ENST00000641299 2975 ntBASIC4.14□□□□□ -1.75
RNF4P78317 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.14□□□□□ -1.75
RNF4P78317 MARK2P15-201ENST00000432204 2186 ntBASIC4.14□□□□□ -1.75
RNF4P78317 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
RNF4P78317 AC015813.6-201ENST00000624409 5808 ntBASIC4.13□□□□□ -1.75
RNF4P78317 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.13□□□□□ -1.75
RNF4P78317 AC092435.4-201ENST00000623012 4159 ntBASIC4.13□□□□□ -1.75
RNF4P78317 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 RNU6-600P-201ENST00000362524 99 ntBASIC4.13□□□□□ -1.75
RNF4P78317 Y_RNA.27-201ENST00000362540 103 ntBASIC4.13□□□□□ -1.75
RNF4P78317 RNU6-212P-201ENST00000362642 104 ntBASIC4.13□□□□□ -1.75
RNF4P78317 RNU1-63P-201ENST00000383902 164 ntBASIC4.13□□□□□ -1.75
RNF4P78317 MIR141-201ENST00000384975 95 ntBASIC4.13□□□□□ -1.75
RNF4P78317 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.13□□□□□ -1.75
RNF4P78317 RPS29P13-201ENST00000402041 169 ntBASIC4.13□□□□□ -1.75
RNF4P78317 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.13□□□□□ -1.75
RNF4P78317 RPL18P10-201ENST00000425606 538 ntBASIC4.13□□□□□ -1.75
RNF4P78317 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 FTH1P6-201ENST00000430768 320 ntBASIC4.13□□□□□ -1.75
RNF4P78317 AC011998.1-201ENST00000433403 117 ntBASIC4.13□□□□□ -1.75
RNF4P78317 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.13□□□□□ -1.75
RNF4P78317 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.13□□□□□ -1.75
RNF4P78317 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.13□□□□□ -1.75
RNF4P78317 NUTF2P7-201ENST00000453086 375 ntBASIC4.13□□□□□ -1.75
RNF4P78317 TOMM22P6-201ENST00000465035 409 ntBASIC4.13□□□□□ -1.75
RNF4P78317 AC025465.3-201ENST00000510570 311 ntBASIC4.13□□□□□ -1.75
RNF4P78317 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.13□□□□□ -1.75
RNF4P78317 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.13□□□□□ -1.75
RNF4P78317 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.13□□□□□ -1.75
RNF4P78317 MIR4782-201ENST00000577987 79 ntBASIC4.13□□□□□ -1.75
RNF4P78317 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 U6.92-201ENST00000636464 89 ntBASIC4.13□□□□□ -1.75
RNF4P78317 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.13□□□□□ -1.75
RNF4P78317 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
RNF4P78317 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
RNF4P78317 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
RNF4P78317 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RNF4P78317 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF4P78317 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF4P78317 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF4P78317 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.12□□□□□ -1.75
RNF4P78317 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF4P78317 RNU6-209P-201ENST00000384118 107 ntBASIC4.12□□□□□ -1.75
RNF4P78317 Y_RNA.458-201ENST00000384240 102 ntBASIC4.12□□□□□ -1.75
RNF4P78317 Y_RNA.515-201ENST00000384535 112 ntBASIC4.12□□□□□ -1.75
RNF4P78317 RNU6-140P-201ENST00000384566 108 ntBASIC4.12□□□□□ -1.75
RNF4P78317 MIR3065-201ENST00000390137 79 ntBASIC4.12□□□□□ -1.75
RNF4P78317 RPL21P75-201ENST00000396599 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 RPL21P28-201ENST00000401418 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AL590556.1-201ENST00000423231 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.12□□□□□ -1.75
RNF4P78317 RPL23AP22-201ENST00000437556 453 ntBASIC4.12□□□□□ -1.75
RNF4P78317 SUMO1P2-201ENST00000452524 304 ntBASIC4.12□□□□□ -1.75
RNF4P78317 U8.22-201ENST00000459141 133 ntBASIC4.12□□□□□ -1.75
RNF4P78317 RPL21P11-201ENST00000461458 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 RPL21P39-201ENST00000463605 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC087190.1-201ENST00000484462 480 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC107032.1-201ENST00000485945 480 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC132942.1-201ENST00000486753 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC093591.1-201ENST00000491435 481 ntBASIC4.12□□□□□ -1.75
RNF4P78317 RPL21P16-201ENST00000495531 483 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC078918.1-201ENST00000498515 228 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.12□□□□□ -1.75
RNF4P78317 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.12□□□□□ -1.75
RNF4P78317 AC067942.3-201ENST00000512025 362 ntBASIC4.12□□□□□ -1.75
RNF4P78317 Y_RNA.706-201ENST00000516933 99 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.12□□□□□ -1.75
RNF4P78317 MIR6891-201ENST00000618788 93 ntBASIC4.12□□□□□ -1.75
RNF4P78317 AC027309.3-201ENST00000623419 351 ntBASIC4.12□□□□□ -1.75
RNF4P78317 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF4P78317 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
RNF4P78317 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF4P78317 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.11□□□□□ -1.75
RNF4P78317 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 RNA5SP151-201ENST00000365632 117 ntBASIC4.11□□□□□ -1.75
RNF4P78317 RNU6-658P-201ENST00000384606 106 ntBASIC4.11□□□□□ -1.75
RNF4P78317 MIR215-201ENST00000384858 110 ntBASIC4.11□□□□□ -1.75
RNF4P78317 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
RNF4P78317 MTCYBP2-201ENST00000407745 171 ntBASIC4.11□□□□□ -1.75
RNF4P78317 MIR1183-201ENST00000408856 89 ntBASIC4.11□□□□□ -1.75
RNF4P78317 RN7SKP177-201ENST00000410567 355 ntBASIC4.11□□□□□ -1.75
RNF4P78317 RNU2-25P-201ENST00000411041 191 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AC091286.1-201ENST00000431233 461 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms