Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
LMX1BO60663 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
LMX1BO60663 RNU1-70P-201ENST00000362618 164 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 RNU6-254P-201ENST00000363377 107 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 SNORD116-29-201ENST00000384516 83 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 MIR548K-201ENST00000408406 116 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.91□□□□□ -1.94
LMX1BO60663 POLHP1-201ENST00000411806 470 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.91□□□□□ -1.94
LMX1BO60663 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.91□□□□□ -1.94
LMX1BO60663 VN1R36P-201ENST00000414936 291 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 TOMM22P1-201ENST00000418578 312 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.91□□□□□ -1.94
LMX1BO60663 ARL5AP1-201ENST00000418991 388 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 NCOR1P3-201ENST00000420479 303 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 MTCO1P39-201ENST00000426148 480 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AL669831.1-202ENST00000428504 417 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC006028.1-201ENST00000438379 402 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 GTF2IP13-201ENST00000438487 386 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.91□□□□□ -1.94
LMX1BO60663 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.91□□□□□ -1.94
LMX1BO60663 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.91□□□□□ -1.94
LMX1BO60663 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.91□□□□□ -1.94
LMX1BO60663 RPL21P8-201ENST00000465083 535 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC009901.1-201ENST00000506703 541 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 RN7SKP258-201ENST00000517151 304 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 SCARNA20.6-201ENST00000517251 106 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
LMX1BO60663 AC004024.1-201ENST00000549244 247 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC090115.3-201ENST00000553218 849 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC020661.2-201ENST00000560114 134 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 ZNF192P1-203ENST00000565888 810 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.91□□□□□ -1.94
LMX1BO60663 AC005668.1-201ENST00000571142 476 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.91□□□□□ -1.94
LMX1BO60663 MIR4513-201ENST00000581077 86 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.91□□□□□ -1.94
LMX1BO60663 AL022345.1-201ENST00000607292 135 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 uc_338.15-201ENST00000615470 191 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AC092628.2-201ENST00000622492 339 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 AL359757.2-201ENST00000624309 274 ntBASIC2.91□□□□□ -1.94
LMX1BO60663 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
LMX1BO60663 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
LMX1BO60663 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
LMX1BO60663 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
LMX1BO60663 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
LMX1BO60663 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
LMX1BO60663 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 RNU6-1252P-201ENST00000363054 104 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 SNORD56.3-201ENST00000363507 71 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 Y_RNA.387-201ENST00000383918 102 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
LMX1BO60663 MIR1302-11-201ENST00000408051 138 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 MIR1302-9-201ENST00000408365 138 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 MIR1302-10-201ENST00000408734 138 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC2.9□□□□□ -1.95
LMX1BO60663 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 BX682237.1-201ENST00000415016 335 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 ARF4P2-201ENST00000430209 526 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.9□□□□□ -1.95
LMX1BO60663 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.9□□□□□ -1.95
LMX1BO60663 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.9□□□□□ -1.95
LMX1BO60663 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.9□□□□□ -1.95
LMX1BO60663 AC078817.1-201ENST00000492623 435 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 KLHL2P1-201ENST00000508691 521 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.9□□□□□ -1.95
LMX1BO60663 RNU1-143P-201ENST00000516296 146 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 Y_RNA.689-201ENST00000516589 107 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 SNORA64.4-201ENST00000516632 81 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 SNORA25.17-201ENST00000517184 124 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 IGKV2-26-201ENST00000518305 343 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.9□□□□□ -1.95
LMX1BO60663 AP000889.2-201ENST00000532684 490 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 MIR1302-2-201ENST00000607096 138 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 U1.23-201ENST00000610293 146 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 FAM157A-202ENST00000615155 405 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 RNU1-68P-201ENST00000615382 146 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 U1.39-201ENST00000621562 146 ntBASIC2.9□□□□□ -1.95
LMX1BO60663 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.9□□□□□ -1.95
LMX1BO60663 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC2.9□□□□□ -1.95
LMX1BO60663 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LMX1BO60663 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
LMX1BO60663 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.89□□□□□ -1.95
LMX1BO60663 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
LMX1BO60663 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
LMX1BO60663 SNORD42.2-201ENST00000365570 69 ntBASIC2.89□□□□□ -1.95
LMX1BO60663 Y_RNA.399-201ENST00000383955 105 ntBASIC2.89□□□□□ -1.95
LMX1BO60663 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
LMX1BO60663 MTCO2P12-201ENST00000427426 682 ntBASIC2.89□□□□□ -1.95
LMX1BO60663 NDUFA5P4-201ENST00000436704 385 ntBASIC2.89□□□□□ -1.95
LMX1BO60663 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.89□□□□□ -1.95
LMX1BO60663 NEFMP1-201ENST00000443423 1006 ntBASIC2.89□□□□□ -1.95
LMX1BO60663 DYNLL1P5-201ENST00000467158 270 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms