Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.8-201ENST00000362353 102 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 RNU6-335P-201ENST00000364563 113 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 RNU6-926P-201ENST00000384075 107 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 MIR32-201ENST00000384965 70 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 RNA5SP213-201ENST00000391031 106 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 RNA5SP332-201ENST00000391063 115 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 SDHCP2-201ENST00000398565 501 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 UBA52P6-201ENST00000399822 382 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 U3.37-201ENST00000408528 213 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 RNU6-1245P-201ENST00000411130 106 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC096638.1-201ENST00000444678 216 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AL162591.2-201ENST00000449634 317 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 RNU6-1198P-201ENST00000516904 67 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 MIR3144-201ENST00000579460 79 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC008745.1-201ENST00000604064 271 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 MIR6748-201ENST00000610433 71 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC108706.1-201ENST00000611053 297 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC090132.2-201ENST00000615881 347 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AC008079.2-201ENST00000623543 20396 ntBASIC4.84□□□□□ -1.63
USP3Q9Y6I4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
USP3Q9Y6I4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.84□□□□□ -1.64
USP3Q9Y6I4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
USP3Q9Y6I4 AL136164.3-201ENST00000624429 3978 ntBASIC4.84□□□□□ -1.64
USP3Q9Y6I4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.64
USP3Q9Y6I4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
USP3Q9Y6I4 AC118273.1-201ENST00000525324 3006 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 MIR410-201ENST00000362222 80 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 RNU6-527P-201ENST00000363425 104 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 Y_RNA.136-201ENST00000363444 102 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 RNU6-1027P-201ENST00000383998 107 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 RNU6-142P-201ENST00000384019 107 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 MIR129-1-201ENST00000384972 72 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 RNU6-394P-201ENST00000410735 107 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 Z74021.1-201ENST00000423610 407 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 AC011742.1-201ENST00000431448 434 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 RPL30P1-201ENST00000488676 339 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 AC108043.1-201ENST00000512696 574 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 AP001781.1-201ENST00000530977 207 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 H3F3AP1-201ENST00000559984 334 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 AC073349.3-201ENST00000617616 186 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 OR56B2P-202ENST00000641377 2453 ntBASIC4.83□□□□□ -1.64
USP3Q9Y6I4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP3Q9Y6I4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 Y_RNA.286-201ENST00000364813 102 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 SNORA71.2-201ENST00000364941 134 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 Y_RNA.383-201ENST00000383855 97 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 RNU6-541P-201ENST00000384709 110 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 RNU6-918P-201ENST00000391219 106 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 EIF4A1P3-201ENST00000411521 244 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 RPEP3-201ENST00000425462 676 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 CYCSP32-201ENST00000440548 321 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 AP000870.1-201ENST00000472927 406 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 KC877373.1-201ENST00000479066 408 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 SNORA27.4-201ENST00000516650 95 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 SNORA43.2-201ENST00000516652 128 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 MRPS18CP4-201ENST00000535821 231 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 AC053481.4-201ENST00000583164 216 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 AC241585.2-209ENST00000638217 143 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 AP001642.1-201ENST00000624727 2117 ntBASIC4.82□□□□□ -1.64
USP3Q9Y6I4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP3Q9Y6I4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms