Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RNA5SP200-201ENST00000516360 103 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AP003461.1-201ENST00000528866 78 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 CBX3P7-201ENST00000532876 502 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 ARL2BPP2-201ENST00000550907 489 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 MIR3146-201ENST00000580367 79 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC024619.4-201ENST00000580924 316 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AP001004.1-201ENST00000582468 324 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AL449363.1-201ENST00000617815 186 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC098657.3-201ENST00000620434 263 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AL356266.1-201ENST00000623311 483 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC079416.3-201ENST00000624479 549 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AC025048.6-202ENST00000627667 438 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 MIR7157-201ENST00000635801 60 ntBASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.85□□□□□ -2.11
EXOSC4Q9NPD3 AL109809.4-201ENST00000603520 2185 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 RNA5SP289-201ENST00000362332 137 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-1284P-201ENST00000363701 100 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 RNY4P16-201ENST00000364768 94 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 SNORA72.3-201ENST00000365074 132 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-658P-201ENST00000384606 106 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 BTF3P7-201ENST00000407097 488 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 IPO7P1-201ENST00000442031 636 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 NEFMP1-201ENST00000443423 1006 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 RPL23AP41-201ENST00000484754 458 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AF131216.2-201ENST00000512316 564 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 SNORA31.3-201ENST00000516029 96 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC107934.1-201ENST00000522215 217 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC007151.1-201ENST00000572774 483 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC073544.2-201ENST00000601155 540 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 KC877982.1-201ENST00000602313 470 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC007363.1-201ENST00000604736 620 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 AC006338.1-201ENST00000618453 749 ntBASIC1.84□□□□□ -2.11
EXOSC4Q9NPD3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 RNU2-36P-201ENST00000410361 191 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 NDUFS5P4-201ENST00000412983 318 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 ELOCP17-201ENST00000414751 326 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AL353729.1-201ENST00000425044 720 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AL593851.1-201ENST00000426171 157 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 ISCA1P1-201ENST00000426679 387 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AL592045.1-201ENST00000429867 352 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 MYL8P-204ENST00000431574 518 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 RPL37P21-201ENST00000435890 276 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 MTND4P25-201ENST00000441039 533 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 ZNF736P8Y-201ENST00000451913 669 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC080013.2-201ENST00000460866 323 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC068587.2-201ENST00000478386 781 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 SCARNA16.3-201ENST00000516595 184 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 RNU6-1003P-201ENST00000517099 105 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AP003122.3-201ENST00000526316 255 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 MTND4LP18-201ENST00000526864 291 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC021739.1-201ENST00000559631 174 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC012435.1-202ENST00000568772 240 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 DUSP12P1-201ENST00000612874 516 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AL589994.2-201ENST00000621124 579 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 MIR6873-201ENST00000622788 63 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 SCARNA15.3-201ENST00000626315 122 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 SCARNA4.1-201ENST00000628597 123 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 MIR3199-2-201ENST00000636243 86 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AL445523.1-201ENST00000451184 1362 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 AC131280.1-202ENST00000624067 4211 ntBASIC1.83□□□□□ -2.12
EXOSC4Q9NPD3 Y_RNA.510-201ENST00000384511 114 ntBASIC1.82□□□□□ -2.12
EXOSC4Q9NPD3 MTCYBP36-201ENST00000404146 440 ntBASIC1.82□□□□□ -2.12
EXOSC4Q9NPD3 AL021407.1-201ENST00000404531 386 ntBASIC1.82□□□□□ -2.12
EXOSC4Q9NPD3 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms