Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR3126-201ENST00000577443 74 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
USP42Q9H9J4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC009268.2-201ENST00000621925 457 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 AC231657.1-201ENST00000624313 397 ntBASIC1.88□□□□□ -2.11
USP42Q9H9J4 RNU6-234P-201ENST00000365229 104 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 RNU1-148P-201ENST00000384472 162 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 MIR147B-201ENST00000390185 80 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 AL079342.2-201ENST00000403367 482 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 AC055731.1-201ENST00000474387 401 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 AL121594.1-201ENST00000475906 575 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 LTV1P1-201ENST00000510683 1237 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 SNORA25.11-201ENST00000515935 105 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 OR6C7P-201ENST00000547875 934 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.87□□□□□ -2.11
USP42Q9H9J4 AC068276.1-201ENST00000605793 379 ntBASIC1.87□□□□□ -2.11
USP42Q9H9J4 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 RNU6-432P-201ENST00000384196 109 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 SNORA46.1-201ENST00000391069 153 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 RPS3AP44-201ENST00000425466 790 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 SKA2P1-201ENST00000425592 390 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 RNU7-136P-201ENST00000458819 69 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 RPL23AP41-201ENST00000484754 458 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 AC026801.1-201ENST00000497178 464 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.86□□□□□ -2.11
USP42Q9H9J4 OR8K2P-201ENST00000524645 927 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 SNRPGP1-201ENST00000553864 222 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 HIGD1AP17-201ENST00000554576 276 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 AC107075.1-201ENST00000613695 314 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 uc_338.12-201ENST00000616344 181 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 AL357080.1-201ENST00000617394 239 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 AL162373.1-201ENST00000620433 407 ntBASIC1.86□□□□□ -2.11
USP42Q9H9J4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USP42Q9H9J4 RNA5SP276-201ENST00000362580 94 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 RNU6-343P-201ENST00000364709 104 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 AL356421.1-201ENST00000403255 413 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AL590084.1-201ENST00000407885 387 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC010153.1-201ENST00000432862 727 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 MTND2P20-201ENST00000440805 661 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC021382.1-201ENST00000483523 359 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 ATP5EP1-201ENST00000510257 156 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AF213884.2-201ENST00000510417 903 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 RNA5SP165-201ENST00000517142 115 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC021739.1-201ENST00000559631 174 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC022662.1-201ENST00000580252 331 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 TUG1_2.1-201ENST00000614234 87 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AP001486.3-201ENST00000615334 372 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 RMST_2.1-201ENST00000617263 136 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC093875.1-201ENST00000623688 504 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AL356094.1-201ENST00000624663 1212 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AC116618.1-201ENST00000634617 774 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 AL359854.1-201ENST00000614203 1594 ntBASIC1.85□□□□□ -2.11
USP42Q9H9J4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.84□□□□□ -2.11
USP42Q9H9J4 AC011477.1-204ENST00000623416 1325 ntBASIC1.84□□□□□ -2.11
USP42Q9H9J4 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
USP42Q9H9J4 U6atac.2-201ENST00000408644 118 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 RNU2-63P-201ENST00000410792 194 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AL356379.1-201ENST00000414105 126 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 MRPS36P1-201ENST00000421291 307 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AL161651.1-201ENST00000440882 223 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC009238.1-201ENST00000442165 424 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC009237.6-201ENST00000446969 424 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 RPL21P134-201ENST00000453468 483 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC1.84□□□□□ -2.12
USP42Q9H9J4 BZW1P2-201ENST00000473537 826 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC107032.1-201ENST00000485945 480 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 RNU6-1225P-201ENST00000516336 65 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 SNORA31.25-201ENST00000517242 134 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.84□□□□□ -2.12
USP42Q9H9J4 AL121821.2-201ENST00000556081 394 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.84□□□□□ -2.12
USP42Q9H9J4 AL355297.2-201ENST00000604792 129 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AL138963.2-201ENST00000605137 226 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 AC069304.2-201ENST00000605154 435 ntBASIC1.84□□□□□ -2.12
USP42Q9H9J4 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
USP42Q9H9J4 AL354685.2-201ENST00000448218 1447 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 RNU6-486P-201ENST00000363116 107 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 SNORD114-22-201ENST00000365423 72 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 RNU6-19P-201ENST00000384718 107 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 RPL21P1-201ENST00000399532 476 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 CCNG1P1-201ENST00000406783 885 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms