Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.85□□□□□ -1.95
USP28Q96RU2 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.85□□□□□ -1.95
USP28Q96RU2 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.85□□□□□ -1.95
USP28Q96RU2 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP28Q96RU2 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.85□□□□□ -1.95
USP28Q96RU2 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.85□□□□□ -1.95
USP28Q96RU2 Y_RNA.1-201ENST00000352915 104 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 RNA5SP456-201ENST00000364002 114 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP28Q96RU2 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
USP28Q96RU2 RNU1-109P-201ENST00000383960 147 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 RNU6-456P-201ENST00000384493 107 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 MIR34A-201ENST00000385130 110 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 RNU6-278P-201ENST00000390945 109 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 MTCO3P40-201ENST00000392516 676 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL139039.1-201ENST00000401900 692 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.85□□□□□ -1.95
USP28Q96RU2 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.85□□□□□ -1.95
USP28Q96RU2 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.85□□□□□ -1.95
USP28Q96RU2 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.85□□□□□ -1.95
USP28Q96RU2 BX682237.1-201ENST00000415016 335 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.85□□□□□ -1.95
USP28Q96RU2 AC073464.1-201ENST00000429823 534 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.85□□□□□ -1.95
USP28Q96RU2 AC002486.1-201ENST00000435098 391 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 RPL35AP22-201ENST00000436855 335 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL136380.1-201ENST00000447970 162 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.85□□□□□ -1.95
USP28Q96RU2 AC013267.1-201ENST00000458227 267 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 snoU13.22-201ENST00000459428 104 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 RPL31P60-201ENST00000478450 367 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL049874.1-201ENST00000489560 388 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP28Q96RU2 HMGB1P29-201ENST00000505659 499 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.85□□□□□ -1.95
USP28Q96RU2 RNU6-718P-201ENST00000516166 105 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 CASP1P1-201ENST00000526345 212 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.85□□□□□ -1.95
USP28Q96RU2 GTF3AP2-201ENST00000557014 266 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.85□□□□□ -1.95
USP28Q96RU2 AC105224.1-201ENST00000587055 421 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AF038458.1-201ENST00000588406 262 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 Z84480.1-201ENST00000605131 311 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AC092794.1-201ENST00000612734 582 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL359880.1-201ENST00000621879 266 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 AL160394.1-201ENST00000624765 724 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 OR4G2P-201ENST00000328113 903 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 RNU6-1180P-201ENST00000364935 107 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 RNU6-1103P-201ENST00000384150 107 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 SNORA36C-201ENST00000384289 132 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AL139095.1-201ENST00000404326 391 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AL359634.1-202ENST00000404721 284 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 RNU2-9P-201ENST00000410194 145 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 RNA5SP181-201ENST00000410246 98 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AC018630.2-202ENST00000422992 927 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.84□□□□□ -1.95
USP28Q96RU2 AC025750.2-201ENST00000442609 450 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.84□□□□□ -1.95
USP28Q96RU2 HSPE1P6-201ENST00000479457 291 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AC007182.2-201ENST00000489251 402 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.84□□□□□ -1.95
USP28Q96RU2 AC019235.1-201ENST00000503847 207 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 SEM1P1-201ENST00000506694 209 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.84□□□□□ -1.95
USP28Q96RU2 RNA5SP320-201ENST00000516263 124 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 HMGN1P28-201ENST00000521340 364 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.84□□□□□ -1.95
USP28Q96RU2 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.84□□□□□ -1.95
USP28Q96RU2 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.84□□□□□ -1.95
USP28Q96RU2 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.84□□□□□ -1.95
USP28Q96RU2 DPPA3P3-201ENST00000603842 430 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AC025449.1-201ENST00000603896 529 ntBASIC2.84□□□□□ -1.95
USP28Q96RU2 AC069528.2-201ENST00000624849 1991 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.83□□□□□ -1.96
USP28Q96RU2 OR4G2P-202ENST00000641004 1759 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 RNU5A-1-201ENST00000362698 116 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 RNU6-1090P-201ENST00000364065 94 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP28Q96RU2 RNU6-74P-201ENST00000384235 107 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 RNA5SP354-201ENST00000391247 136 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 RNU2-62P-201ENST00000410868 191 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.83□□□□□ -1.96
USP28Q96RU2 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.83□□□□□ -1.96
USP28Q96RU2 AC008850.1-201ENST00000427546 362 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AL590383.1-201ENST00000428602 75 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC006946.1-201ENST00000429106 328 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 ARL5AP4-201ENST00000430731 512 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.83□□□□□ -1.96
USP28Q96RU2 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.83□□□□□ -1.96
USP28Q96RU2 AL121769.1-201ENST00000469473 401 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC097462.2-201ENST00000504623 481 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC009646.1-201ENST00000510455 318 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.83□□□□□ -1.96
USP28Q96RU2 RNU6-390P-201ENST00000516259 103 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 Y_RNA.704-201ENST00000516851 102 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 RNU6-840P-201ENST00000517275 65 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.83□□□□□ -1.96
USP28Q96RU2 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.83□□□□□ -1.96
USP28Q96RU2 AP001596.2-201ENST00000608410 312 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC068944.2-201ENST00000610373 403 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms