Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC091057.3-201ENST00000602684 733 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC097478.2-201ENST00000610572 514 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 MIR4509-1-201ENST00000618224 94 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.97□□□□□ -2.09
BRCA1P38398 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 MTATP6P19-201ENST00000413797 659 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.97□□□□□ -2.09
BRCA1P38398 AC096649.2-201ENST00000416186 393 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.97□□□□□ -2.09
BRCA1P38398 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.97□□□□□ -2.09
BRCA1P38398 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.97□□□□□ -2.09
BRCA1P38398 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC1.97□□□□□ -2.09
BRCA1P38398 FCF1P6-201ENST00000456841 595 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC135721.1-201ENST00000497954 479 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 SNORA19.3-201ENST00000516165 130 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.97□□□□□ -2.09
BRCA1P38398 DEFB108A-201ENST00000530110 222 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.97□□□□□ -2.09
BRCA1P38398 AC013553.2-201ENST00000604244 589 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC140725.3-201ENST00000616193 880 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
BRCA1P38398 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
BRCA1P38398 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
BRCA1P38398 RNU6-288P-201ENST00000363690 104 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 RNU6-884P-201ENST00000363889 107 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 RNU1-42P-201ENST00000364033 160 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 MTCO1P17-201ENST00000411522 491 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.96□□□□□ -2.1
BRCA1P38398 UBE2FP1-201ENST00000416536 447 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 HMGB1P49-201ENST00000418882 569 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.96□□□□□ -2.1
BRCA1P38398 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.96□□□□□ -2.1
BRCA1P38398 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.96□□□□□ -2.1
BRCA1P38398 TRGVB-201ENST00000453257 471 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AC005410.1-202ENST00000460347 485 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
BRCA1P38398 LTV1P1-201ENST00000510683 1237 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.96□□□□□ -2.1
BRCA1P38398 SNORD53B-201ENST00000577887 78 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.96□□□□□ -2.1
BRCA1P38398 AC004908.2-201ENST00000609090 574 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AC005332.10-201ENST00000612725 619 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 MIR6515-201ENST00000619843 57 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AL353770.2-201ENST00000620024 78 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 MIR6767-201ENST00000637302 66 ntBASIC1.96□□□□□ -2.1
BRCA1P38398 AL359854.1-201ENST00000614203 1594 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
BRCA1P38398 RNU6-744P-201ENST00000365557 107 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 RNU6-1316P-201ENST00000384242 108 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 AL109755.1-201ENST00000401791 649 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 AL359704.1-201ENST00000411586 781 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.95□□□□□ -2.1
BRCA1P38398 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.95□□□□□ -2.1
BRCA1P38398 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.95□□□□□ -2.1
BRCA1P38398 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.95□□□□□ -2.1
BRCA1P38398 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.95□□□□□ -2.1
BRCA1P38398 RPS15AP34-201ENST00000487776 387 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
BRCA1P38398 EIF4EP3-201ENST00000498782 656 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.95□□□□□ -2.1
BRCA1P38398 SUMO2P6-201ENST00000505273 288 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 AC121758.2-201ENST00000553271 193 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.95□□□□□ -2.1
BRCA1P38398 AL049838.1-201ENST00000563647 981 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 AC060771.1-201ENST00000582031 164 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 AC008121.1-201ENST00000603244 268 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 BNIP3P31-201ENST00000604515 566 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.95□□□□□ -2.1
BRCA1P38398 PVT1_3.1-201ENST00000620853 95 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 AC004808.1-201ENST00000627671 721 ntBASIC1.95□□□□□ -2.1
BRCA1P38398 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.95□□□□□ -2.1
BRCA1P38398 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
BRCA1P38398 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
BRCA1P38398 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.95□□□□□ -2.1
BRCA1P38398 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
BRCA1P38398 RNU6-343P-201ENST00000364709 104 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 RNU2-33P-201ENST00000410344 192 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.94□□□□□ -2.1
BRCA1P38398 MTATP6P20-201ENST00000414147 562 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC007919.1-201ENST00000429380 217 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 RPS15AP5-201ENST00000436276 388 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC005094.1-201ENST00000440420 368 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC020550.1-201ENST00000447385 163 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AL031313.1-201ENST00000448435 256 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC092991.1-201ENST00000477176 376 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC021382.1-201ENST00000483523 359 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC093809.1-201ENST00000509155 340 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 RN7SKP49-201ENST00000516675 260 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms