Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.21■□□□□ 0.19
CSMD1Q96PZ7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CSMD1Q96PZ7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.21■□□□□ 0.18
CSMD1Q96PZ7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.21■□□□□ 0.18
CSMD1Q96PZ7 TERC-201ENST00000602385 541 ntBASIC16.21■□□□□ 0.18
CSMD1Q96PZ7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.21■□□□□ 0.18
CSMD1Q96PZ7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.21■□□□□ 0.18
CSMD1Q96PZ7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 TUBB8P6-201ENST00000436895 1288 ntBASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 AC034232.1-201ENST00000506026 1064 ntBASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 AC098831.1-202ENST00000438821 336 ntBASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.2■□□□□ 0.18
CSMD1Q96PZ7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 Z83836.1-201ENST00000624605 1642 ntBASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 AFG3L1P-217ENST00000557444 2447 ntBASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD1Q96PZ7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 RNPS1P1-201ENST00000507437 918 ntBASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 AC148477.8-201ENST00000624298 468 ntBASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 LINC01006-201ENST00000333319 2292 ntBASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 KRT8P26-201ENST00000534154 1276 ntBASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD1Q96PZ7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms