Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 PRSS44-201ENST00000515154 1146 ntBASIC19.34■□□□□ 0.69
USP39Q53GS9 AP003041.3-201ENST00000527151 707 ntBASIC19.34■□□□□ 0.69
USP39Q53GS9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.34■□□□□ 0.69
USP39Q53GS9 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.34■□□□□ 0.69
USP39Q53GS9 CKBP1-201ENST00000565489 1086 ntBASIC19.34■□□□□ 0.69
USP39Q53GS9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.34■□□□□ 0.69
USP39Q53GS9 AC008622.2-201ENST00000617006 1229 ntBASIC19.34■□□□□ 0.69
USP39Q53GS9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
USP39Q53GS9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.33■□□□□ 0.69
USP39Q53GS9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
USP39Q53GS9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP39Q53GS9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
USP39Q53GS9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP39Q53GS9 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.33■□□□□ 0.68
USP39Q53GS9 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.33■□□□□ 0.68
USP39Q53GS9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.33■□□□□ 0.68
USP39Q53GS9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP39Q53GS9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP39Q53GS9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.33■□□□□ 0.68
USP39Q53GS9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.33■□□□□ 0.68
USP39Q53GS9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP39Q53GS9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.33■□□□□ 0.68
USP39Q53GS9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 AP001271.2-201ENST00000624018 1556 ntBASIC19.32■□□□□ 0.68
USP39Q53GS9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC005332.1-201ENST00000577698 1310 ntBASIC19.32■□□□□ 0.68
USP39Q53GS9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
USP39Q53GS9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.32■□□□□ 0.68
USP39Q53GS9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 HCG4P8-203ENST00000443049 980 ntBASIC19.32■□□□□ 0.68
USP39Q53GS9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.32■□□□□ 0.68
USP39Q53GS9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.32■□□□□ 0.68
USP39Q53GS9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC116407.4-201ENST00000623319 1061 ntBASIC19.32■□□□□ 0.68
USP39Q53GS9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
USP39Q53GS9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 AC007952.6-201ENST00000573168 2673 ntBASIC19.32■□□□□ 0.68
USP39Q53GS9 AC003957.1-201ENST00000625108 2673 ntBASIC19.32■□□□□ 0.68
USP39Q53GS9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.32■□□□□ 0.68
USP39Q53GS9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.32■□□□□ 0.68
USP39Q53GS9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.32■□□□□ 0.68
USP39Q53GS9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP39Q53GS9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
USP39Q53GS9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.31■□□□□ 0.68
USP39Q53GS9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.31■□□□□ 0.68
USP39Q53GS9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.31■□□□□ 0.68
USP39Q53GS9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
USP39Q53GS9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
USP39Q53GS9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP39Q53GS9 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP39Q53GS9 AL450487.1-201ENST00000426799 995 ntBASIC19.31■□□□□ 0.68
USP39Q53GS9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.31■□□□□ 0.68
USP39Q53GS9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms