Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TOB2P1-201ENST00000469761 992 ntBASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 AL662844.1-201ENST00000546340 181 ntBASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 KRT18P31-201ENST00000506277 1292 ntBASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 MIR4674-201ENST00000582457 87 ntBASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC88AQ3V6T2 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 AC138894.3-201ENST00000603787 634 ntBASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC88AQ3V6T2 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 RNA5SP419-201ENST00000515908 135 ntBASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC88AQ3V6T2 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 MIR574-201ENST00000385209 96 ntBASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 NUS1P1-201ENST00000446295 882 ntBASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 RNF126P1-202ENST00000569893 925 ntBASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 KRT16P4-201ENST00000453883 522 ntBASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 AC104819.1-201ENST00000504587 486 ntBASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
CCDC88AQ3V6T2 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 TSPY22P-201ENST00000427496 604 ntBASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 LINC00265-3P-201ENST00000447588 903 ntBASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 AC079776.4-201ENST00000511039 504 ntBASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms