Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC26.38■■□□□ 1.81
MSH6P52701 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC26.38■■□□□ 1.81
MSH6P52701 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
MSH6P52701 HMGN1P19-201ENST00000436976 333 ntBASIC26.37■■□□□ 1.81
MSH6P52701 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC26.37■■□□□ 1.81
MSH6P52701 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 BET1L-206ENST00000486280 665 ntTSL 3 BASIC26.37■■□□□ 1.81
MSH6P52701 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC26.37■■□□□ 1.81
MSH6P52701 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC26.37■■□□□ 1.81
MSH6P52701 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC26.37■■□□□ 1.81
MSH6P52701 ABR-217ENST00000572441 563 ntTSL 4 BASIC26.37■■□□□ 1.81
MSH6P52701 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
MSH6P52701 AL390719.2-201ENST00000606993 987 ntBASIC26.37■■□□□ 1.81
MSH6P52701 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC26.37■■□□□ 1.81
MSH6P52701 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC26.37■■□□□ 1.81
MSH6P52701 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH6P52701 GOLGA2P11-201ENST00000562660 1621 ntBASIC26.37■■□□□ 1.81
MSH6P52701 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC26.36■■□□□ 1.81
MSH6P52701 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC26.36■■□□□ 1.81
MSH6P52701 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC26.36■■□□□ 1.81
MSH6P52701 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
MSH6P52701 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
MSH6P52701 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC26.35■■□□□ 1.81
MSH6P52701 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC26.35■■□□□ 1.81
MSH6P52701 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.35■■□□□ 1.81
MSH6P52701 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC26.35■■□□□ 1.81
MSH6P52701 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC26.35■■□□□ 1.81
MSH6P52701 COX10-202ENST00000429152 875 ntTSL 2 BASIC26.35■■□□□ 1.81
MSH6P52701 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC26.35■■□□□ 1.81
MSH6P52701 MCCD1P1-208ENST00000445732 328 ntBASIC26.35■■□□□ 1.81
MSH6P52701 RNPS1P1-201ENST00000507437 918 ntBASIC26.35■■□□□ 1.81
MSH6P52701 AC106730.1-201ENST00000566722 1090 ntBASIC26.35■■□□□ 1.81
MSH6P52701 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC26.35■■□□□ 1.81
MSH6P52701 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC26.35■■□□□ 1.81
MSH6P52701 HOTTIP_1.1-201ENST00000620415 57 ntBASIC26.35■■□□□ 1.81
MSH6P52701 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
MSH6P52701 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
MSH6P52701 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
MSH6P52701 CLDN5-201ENST00000403084 2357 ntBASIC26.35■■□□□ 1.81
MSH6P52701 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
MSH6P52701 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
MSH6P52701 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
MSH6P52701 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
MSH6P52701 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
MSH6P52701 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
MSH6P52701 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
MSH6P52701 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC26.34■■□□□ 1.81
MSH6P52701 LSM5-204ENST00000409909 740 ntTSL 2 BASIC26.34■■□□□ 1.81
MSH6P52701 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC26.34■■□□□ 1.81
MSH6P52701 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.34■■□□□ 1.81
MSH6P52701 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC26.34■■□□□ 1.81
MSH6P52701 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC26.34■■□□□ 1.81
MSH6P52701 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC26.34■■□□□ 1.81
MSH6P52701 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC26.34■■□□□ 1.81
MSH6P52701 IGHV3-41-201ENST00000613121 348 ntBASIC26.34■■□□□ 1.81
MSH6P52701 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
MSH6P52701 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
MSH6P52701 PMS2P7-201ENST00000506558 1336 ntBASIC26.34■■□□□ 1.81
MSH6P52701 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC26.33■■□□□ 1.81
MSH6P52701 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 AL031284.1-201ENST00000419297 478 ntBASIC26.33■■□□□ 1.81
MSH6P52701 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC26.33■■□□□ 1.81
MSH6P52701 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC26.33■■□□□ 1.81
MSH6P52701 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC26.33■■□□□ 1.81
MSH6P52701 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
MSH6P52701 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC26.33■■□□□ 1.81
MSH6P52701 AC005332.3-201ENST00000589904 676 ntBASIC26.33■■□□□ 1.81
MSH6P52701 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
MSH6P52701 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC26.33■■□□□ 1.81
MSH6P52701 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
MSH6P52701 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.8
MSH6P52701 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC26.33■■□□□ 1.8
MSH6P52701 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
MSH6P52701 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.8
MSH6P52701 KRT18P67-201ENST00000432816 1264 ntBASIC26.33■■□□□ 1.8
MSH6P52701 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC26.33■■□□□ 1.8
MSH6P52701 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC26.33■■□□□ 1.8
MSH6P52701 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC26.33■■□□□ 1.8
MSH6P52701 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.8
MSH6P52701 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC26.33■■□□□ 1.8
MSH6P52701 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms