Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC010285.1-201ENST00000470580 392 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 BX284632.1-201ENST00000478218 541 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RN7SKP46-201ENST00000515942 234 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 RNU7-110P-201ENST00000516891 62 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.777-201ENST00000516982 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 SNORA31.19-201ENST00000517079 126 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 SNORA74C-1-201ENST00000580726 201 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.771-201ENST00000598668 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 SNORD113-5-201ENST00000607261 78 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 Y_RNA.789-201ENST00000622480 102 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AC008785.1-201ENST00000624475 456 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 AC099654.2-201ENST00000433031 1980 ntBASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
HIF3AQ9Y2N7 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RBBP8P1-201ENST00000449447 1844 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-1279P-201ENST00000383917 103 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-166P-201ENST00000384371 107 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-843P-201ENST00000384454 104 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-1154P-201ENST00000391001 104 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 TBCAP2-201ENST00000416175 326 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AC007919.1-201ENST00000429380 217 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP103-201ENST00000459503 118 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RN7SL319P-201ENST00000480656 221 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RN7SL558P-201ENST00000497468 299 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-377P-201ENST00000515965 102 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-313P-201ENST00000516317 112 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-709P-201ENST00000517257 104 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AC010928.2-201ENST00000588017 287 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AC006116.3-201ENST00000592968 361 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AP002826.1-201ENST00000608835 315 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 AC007390.2-201ENST00000606229 3803 ntBASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
HIF3AQ9Y2N7 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AL359693.1-201ENST00000614959 2407 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AP001642.1-201ENST00000624727 2117 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AP001273.1-201ENST00000624493 3152 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AL079305.1-201ENST00000623159 3008 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RPL23P2-201ENST00000320371 421 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 UBBP2-201ENST00000376781 231 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 SNORD116-18-201ENST00000383961 92 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-417P-201ENST00000384712 107 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 MIR105-2-201ENST00000385083 81 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AC007560.1-201ENST00000426912 237 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RPS27P18-201ENST00000431701 247 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 snoU13.30-201ENST00000458951 104 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RN7SL610P-201ENST00000463845 291 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AP001025.1-201ENST00000486139 332 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 HMGB1P22-201ENST00000505315 124 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AC004980.4-201ENST00000513375 203 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RN7SKP276-201ENST00000516242 268 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP392-201ENST00000516905 112 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP291-201ENST00000517222 105 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 MIR1269B-201ENST00000580405 75 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 OR7E18P-201ENST00000592589 702 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 SNRPGP15-201ENST00000600149 222 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 CR381572.2-201ENST00000624852 397 ntBASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HIF3AQ9Y2N7 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AL445487.1-201ENST00000415694 1580 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms