Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC116353.2-201ENST00000505332 712 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC116655.1-201ENST00000508324 901 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC008011.1-201ENST00000545989 227 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC090115.3-201ENST00000553218 849 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 MIR4286-201ENST00000580651 93 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 VN1R80P-201ENST00000597126 338 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC092807.2-201ENST00000609367 243 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 MIR378J-201ENST00000611988 109 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 WT1-AS_8.1-201ENST00000615200 275 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AL354798.1-201ENST00000622505 329 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
DDX56Q9NY93 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
DDX56Q9NY93 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
DDX56Q9NY93 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 RNU6-19P-201ENST00000384718 107 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 SNORA48.8-201ENST00000391324 134 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 RSL24D1P6-201ENST00000426934 401 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 AL365400.1-201ENST00000431854 640 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 AL671855.1-201ENST00000446875 1203 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 AL358232.1-201ENST00000448030 501 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 RPS29P25-201ENST00000481709 171 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 AC010265.1-201ENST00000513509 211 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 AC114781.4-201ENST00000513707 639 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 MIR5187-201ENST00000583479 76 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 AL020991.1-201ENST00000612314 373 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 MIR6875-201ENST00000617506 72 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 ZYXP1-201ENST00000617638 118 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 SNORA50A-202ENST00000629536 136 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 ZNF519P1-201ENST00000449011 1626 ntBASIC3.83□□□□□ -1.8
DDX56Q9NY93 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
DDX56Q9NY93 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 Y_RNA.100-201ENST00000363141 102 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 RNU6-266P-201ENST00000364225 107 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 SNORA70.2-201ENST00000364506 135 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 Y_RNA.378-201ENST00000365652 113 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 Y_RNA.390-201ENST00000383932 102 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 MIR30B-201ENST00000384850 88 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 EIF4E2P1-201ENST00000393781 255 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 Y_RNA.625-201ENST00000411256 107 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC016831.2-201ENST00000417179 352 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC002075.2-201ENST00000425207 252 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 PTGES3P4-201ENST00000426243 356 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 HMGB1P31-201ENST00000437242 427 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 WASF1P1-201ENST00000447560 1131 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC012308.1-201ENST00000451232 178 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 RPL21P93-201ENST00000480465 489 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 PRDX4P1-201ENST00000507189 574 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 SNORA14.1-201ENST00000516113 141 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 RNU6-1038P-201ENST00000516516 104 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 RNU6-1231P-201ENST00000517185 103 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC134698.4-201ENST00000523451 826 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 OR8R1P-201ENST00000543943 764 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC087499.8-201ENST00000578406 226 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC002044.1-201ENST00000606707 158 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 RMST_3.1-201ENST00000611651 109 ntBASIC3.82□□□□□ -1.8
DDX56Q9NY93 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DDX56Q9NY93 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX56Q9NY93 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
DDX56Q9NY93 AC121333.1-201ENST00000567488 2709 ntBASIC3.81□□□□□ -1.8
DDX56Q9NY93 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
DDX56Q9NY93 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
DDX56Q9NY93 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 176.8 ms