Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNVU1-14-201ENST00000384770 164 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 MIR325-201ENST00000385260 98 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 FAT1P1-201ENST00000406588 507 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 RNU6-1025P-201ENST00000410629 104 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 RNU6-607P-201ENST00000411283 108 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AL353621.1-201ENST00000418219 243 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 YPEL5P1-201ENST00000419731 367 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 NDUFB4P6-201ENST00000436819 366 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 Z82210.1-201ENST00000440037 231 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 RPL32P28-201ENST00000443577 397 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 HMGB3P22-202ENST00000451823 572 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 RNU6-323P-201ENST00000521915 107 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AP005639.2-201ENST00000527592 928 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AC138761.3-201ENST00000579993 334 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AC016727.1-205ENST00000605437 569 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AC012531.5-201ENST00000611375 151 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 ZNF519P1-201ENST00000449011 1626 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 AL049781.1-201ENST00000623195 3585 ntBASIC3.77□□□□□ -1.81
TDP1Q9NUW8 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TDP1Q9NUW8 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC018555.1-201ENST00000567548 1980 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RPS4XP5-202ENST00000449995 1334 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 Y_RNA.419-201ENST00000384041 102 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RNU4-14P-201ENST00000410858 122 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC074085.1-201ENST00000413598 418 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CYCSP33-201ENST00000414485 327 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC097713.2-201ENST00000430199 356 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RPS3AP52-201ENST00000435639 297 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC107399.1-201ENST00000451226 265 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 Y_RNA.635-201ENST00000459041 101 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RPL21P104-201ENST00000464143 478 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC104472.2-201ENST00000469035 601 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RPL30P5-201ENST00000494923 336 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 MTND5P5-201ENST00000503764 376 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC008526.1-201ENST00000509149 338 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RNU6-1332P-201ENST00000516666 104 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 RNU6-1153P-201ENST00000516760 105 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 Y_RNA.701-201ENST00000516812 110 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC007458.1-201ENST00000542812 373 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AC136601.2-201ENST00000604356 474 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 APOOP1-201ENST00000604695 592 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 MIR4727-201ENST00000622232 55 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 AL160413.1-201ENST00000622780 310 ntBASIC3.76□□□□□ -1.81
TDP1Q9NUW8 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TDP1Q9NUW8 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 SNORD3E-201ENST00000362899 217 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 SNORD6-201ENST00000365444 73 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 MIR490-201ENST00000384865 128 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 HSPE1P26-201ENST00000405341 275 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 RNU2-3P-201ENST00000410144 191 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 RN7SKP158-201ENST00000410453 326 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.75□□□□□ -1.81
TDP1Q9NUW8 AL139396.1-201ENST00000421137 167 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 UBE2D3P2-201ENST00000424409 445 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 MYL8P-204ENST00000431574 518 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 ATP5HP2-201ENST00000433885 485 ntBASIC3.75□□□□□ -1.81
TDP1Q9NUW8 AC092573.2-201ENST00000434546 243 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms