Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RPL30P5-201ENST00000494923 336 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 RNU6-506P-201ENST00000516553 94 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 RN7SKP40-201ENST00000517211 242 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 RN7SKP57-201ENST00000517248 293 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 FAM92A1P1-201ENST00000528023 890 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 SUB1P2-201ENST00000556401 297 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 MIR5092-201ENST00000583139 88 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC002545.1-201ENST00000592511 181 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC104763.2-201ENST00000604179 382 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AL137843.1-201ENST00000605078 385 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC007684.1-201ENST00000609671 477 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC017083.3-201ENST00000609955 700 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AL365204.3-201ENST00000612448 685 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AC034102.8-201ENST00000615146 484 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AL731566.2-201ENST00000618971 317 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 AL158209.2-201ENST00000619266 216 ntBASIC2.59□□□□□ -1.99
CCDC28BQ9BUN5 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.59□□□□□ -2
CCDC28BQ9BUN5 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.59□□□□□ -2
CCDC28BQ9BUN5 MTND5P17-201ENST00000418405 1603 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 SMIM11P1-201ENST00000369586 178 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 MIR144-201ENST00000384886 86 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 MIR181A1-201ENST00000385026 110 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 RNA5SP210-201ENST00000391034 120 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 RNU6-1197P-201ENST00000391183 107 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AF274854.1-201ENST00000413236 615 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 Z85995.1-201ENST00000415547 335 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AL031779.1-201ENST00000415663 330 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 MTCO1P21-201ENST00000416634 589 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC069157.1-201ENST00000421749 137 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 MTCO2P19-201ENST00000427513 598 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 HMGB1P27-201ENST00000431429 603 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AL451074.3-201ENST00000437709 472 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 NEFMP1-201ENST00000443423 1006 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 SNORD27.1-201ENST00000516319 72 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 RNA5SP291-201ENST00000517222 105 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC016957.1-201ENST00000534895 309 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 PRELID2P1-201ENST00000552837 301 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC009163.5-201ENST00000575421 637 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 MIR4635-201ENST00000583759 79 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC013553.2-201ENST00000604244 589 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AL021997.1-201ENST00000605757 193 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 U4.5-201ENST00000617137 123 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 AC034229.5-201ENST00000624258 185 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.58□□□□□ -2
CCDC28BQ9BUN5 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
CCDC28BQ9BUN5 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 Y_RNA.159-201ENST00000363674 87 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RNU6-946P-201ENST00000383878 107 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RNU6-641P-201ENST00000384006 107 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 Y_RNA.516-201ENST00000384541 124 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RNU6-14P-201ENST00000384630 106 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 SNORA1.3-201ENST00000384676 136 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RPS4XP3-201ENST00000398541 413 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RPS4XP7-201ENST00000406274 780 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 Y_RNA.599-201ENST00000410489 109 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 TMEM167AP1-201ENST00000423409 219 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC091390.3-201ENST00000426478 338 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RPL23AP30-201ENST00000432419 501 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 DDX3P2-201ENST00000446138 111 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 RNU6-953P-201ENST00000459154 107 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 SRRM1P2-201ENST00000464531 1192 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC116562.3-201ENST00000506136 177 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AP001893.2-201ENST00000526949 202 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC068587.5-201ENST00000528506 175 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 OR4R1P-201ENST00000529879 463 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC034105.4-201ENST00000568304 277 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 HMGB1P6-201ENST00000569046 646 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 MYL12BP1-201ENST00000569826 507 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 DEFB131E-202ENST00000602581 683 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AL391646.1-201ENST00000603860 190 ntBASIC2.57□□□□□ -2
CCDC28BQ9BUN5 AC245389.1-201ENST00000605141 529 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms