Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.99□□□□□ -1.77
USP39Q53GS9 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.99□□□□□ -1.77
USP39Q53GS9 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.99□□□□□ -1.77
USP39Q53GS9 AC092447.9-201ENST00000603395 144 ntBASIC3.99□□□□□ -1.77
USP39Q53GS9 SNORD58B-201ENST00000607313 66 ntBASIC3.99□□□□□ -1.77
USP39Q53GS9 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.99□□□□□ -1.77
USP39Q53GS9 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP39Q53GS9 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP39Q53GS9 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP39Q53GS9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.99□□□□□ -1.77
USP39Q53GS9 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP39Q53GS9 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.98□□□□□ -1.77
USP39Q53GS9 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP39Q53GS9 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP39Q53GS9 SNORD70.1-201ENST00000391007 85 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AL451050.1-201ENST00000450126 415 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC110768.1-201ENST00000509222 400 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.98□□□□□ -1.77
USP39Q53GS9 Y_RNA.680-201ENST00000516441 93 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 RNU4-77P-201ENST00000516692 156 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 SNORD116.3-201ENST00000517176 78 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.98□□□□□ -1.77
USP39Q53GS9 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC016727.2-201ENST00000603988 621 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 AC025588.3-201ENST00000604182 274 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 AC009570.1-201ENST00000609599 745 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 AC091953.5-201ENST00000622919 233 ntBASIC3.98□□□□□ -1.77
USP39Q53GS9 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.98□□□□□ -1.77
USP39Q53GS9 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.98□□□□□ -1.77
USP39Q53GS9 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.98□□□□□ -1.77
USP39Q53GS9 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.98□□□□□ -1.77
USP39Q53GS9 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP39Q53GS9 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP39Q53GS9 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.97□□□□□ -1.77
USP39Q53GS9 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
USP39Q53GS9 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.97□□□□□ -1.77
USP39Q53GS9 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
USP39Q53GS9 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.97□□□□□ -1.77
USP39Q53GS9 RNA5SP72-201ENST00000364442 117 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 RNU6-1078P-201ENST00000364522 103 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP39Q53GS9 SMIM11P1-201ENST00000369586 178 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 Y_RNA.428-201ENST00000384078 102 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 RNU6-472P-201ENST00000384299 107 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 Y_RNA.489-201ENST00000384410 101 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 Y_RNA.493-201ENST00000384422 102 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 RNU6-95P-201ENST00000384697 107 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 U8.11-201ENST00000384699 133 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 U8.12-201ENST00000384701 133 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 SNORA3C-201ENST00000408792 125 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 RPLP0P7-201ENST00000416050 667 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 EI24P1-201ENST00000416584 867 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.97□□□□□ -1.77
USP39Q53GS9 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.97□□□□□ -1.77
USP39Q53GS9 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 ANP32BP2-201ENST00000454525 545 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 SNORD5.1-201ENST00000458800 75 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 U8.18-201ENST00000459285 133 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC087884.1-201ENST00000469738 328 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC022493.2-201ENST00000506122 481 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 SCARNA16.2-201ENST00000516520 172 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 SNORA70.24-201ENST00000517233 118 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 IGKV2-38-201ENST00000517443 247 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP39Q53GS9 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.97□□□□□ -1.77
USP39Q53GS9 AC023157.2-201ENST00000540596 141 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.97□□□□□ -1.77
USP39Q53GS9 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 RPL23AP84-201ENST00000571193 464 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 MIR3941-201ENST00000582572 103 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.97□□□□□ -1.77
USP39Q53GS9 AC096577.2-201ENST00000611455 153 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC015967.1-201ENST00000619893 476 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 AC091925.2-201ENST00000625059 256 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.97□□□□□ -1.77
USP39Q53GS9 GABPAP-201ENST00000419271 1356 ntBASIC3.97□□□□□ -1.77
USP39Q53GS9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
USP39Q53GS9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP39Q53GS9 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.96□□□□□ -1.77
USP39Q53GS9 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
USP39Q53GS9 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU6-874P-201ENST00000362390 105 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 Y_RNA.106-201ENST00000363189 100 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU6-128P-201ENST00000383976 107 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU6-209P-201ENST00000384118 107 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.96□□□□□ -1.78
USP39Q53GS9 RPS29P4-201ENST00000414733 161 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 CALM2P2-201ENST00000428512 440 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms