Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 GTF3AP2-201ENST00000557014 266 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 ZNF519P2-201ENST00000557032 169 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 RPL12P50-201ENST00000603116 116 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC174048.1-201ENST00000603389 144 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC107294.1-201ENST00000609524 467 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC012409.4-201ENST00000612923 249 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC006111.3-201ENST00000622137 383 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP41Q3LFD5 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP41Q3LFD5 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP41Q3LFD5 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP41Q3LFD5 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 Y_RNA.554-201ENST00000384672 102 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 RNU6-606P-201ENST00000384721 111 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 SNORA46-201ENST00000384762 135 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 Y_RNA.576-201ENST00000384781 102 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 MIR181A1-201ENST00000385026 110 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 MIR548F1-201ENST00000408667 84 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 RNU6-648P-201ENST00000410190 107 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL139281.1-201ENST00000422120 335 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 MTCO3P30-201ENST00000426425 670 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 TIMM9P3-201ENST00000428659 274 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL592045.1-201ENST00000429867 352 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 RPL7P54-201ENST00000438336 674 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL590664.1-201ENST00000448065 339 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL162395.1-201ENST00000457882 422 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 RNU7-63P-201ENST00000459054 62 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 HMGN2P13-201ENST00000476476 274 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 RPL39P36-201ENST00000490784 156 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC019235.1-201ENST00000503847 207 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC104806.1-201ENST00000508720 308 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 RNA5SP356-201ENST00000515972 94 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 Y_RNA.704-201ENST00000516851 102 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 RNU6-928P-201ENST00000516876 104 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 RNA5SP503-201ENST00000517047 117 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL512360.1-201ENST00000555346 234 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC027807.1-201ENST00000559921 996 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC136619.2-201ENST00000563361 631 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 MIR4775-201ENST00000581168 75 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 BNIP3P9-201ENST00000603714 553 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL670379.4-201ENST00000605279 254 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC126118.1-201ENST00000607744 628 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 AC005609.4-201ENST00000625071 447 ntBASIC3.17□□□□□ -1.9
USP41Q3LFD5 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP41Q3LFD5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.17□□□□□ -1.9
USP41Q3LFD5 FAM35BP-202ENST00000497389 3337 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP41Q3LFD5 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP41Q3LFD5 SNORD115-7-201ENST00000365306 82 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 RNA5SP344-201ENST00000411081 104 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 MRPL50P2-201ENST00000416821 482 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 AL109913.1-201ENST00000421173 514 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 RPS3AP44-201ENST00000425466 790 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 GPM6BP2-201ENST00000432046 144 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AL606489.2-201ENST00000433886 234 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 HIGD1AP11-201ENST00000438361 280 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 DDX3P2-201ENST00000446138 111 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 GPM6BP1-201ENST00000446387 144 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 MTND1P18-201ENST00000448191 573 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 CECR9-201ENST00000453421 199 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 RNU6-420P-201ENST00000458780 107 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 ARL4AP2-201ENST00000507378 601 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 RNU6-1282P-201ENST00000516735 96 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 RNU6-143P-201ENST00000516942 93 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 RANP3-201ENST00000530970 276 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 AC008752.3-201ENST00000588113 712 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AP001330.5-201ENST00000607176 411 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AC069234.5-201ENST00000611056 416 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AL359547.2-201ENST00000615810 418 ntBASIC3.16□□□□□ -1.9
USP41Q3LFD5 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.16□□□□□ -1.9
USP41Q3LFD5 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP41Q3LFD5 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP41Q3LFD5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms