Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MIR3942-201ENST00000585264 109 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AC025946.2-201ENST00000603398 234 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD9P28356 AC012531.5-201ENST00000611375 151 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AC091953.5-201ENST00000622919 233 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AC007998.5-201ENST00000622938 237 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 MIR4275-201ENST00000636486 87 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 TNPO1P3-201ENST00000436471 2662 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD9P28356 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.43□□□□□ -1.86
HOXD9P28356 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD9P28356 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXD9P28356 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 RNU6-1297P-201ENST00000384415 104 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 U3.19-201ENST00000390893 196 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 RPL7P10-201ENST00000417407 739 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 MTCO2P27-201ENST00000420740 428 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD9P28356 AC090774.1-201ENST00000435925 246 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD9P28356 AC008264.1-201ENST00000447612 367 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 RNU7-152P-201ENST00000458982 64 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 Y_RNA.635-201ENST00000459041 101 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 MTND4P17-201ENST00000470444 350 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AC021205.2-201ENST00000480069 347 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 RPL21P93-201ENST00000480465 489 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 APOOP4-201ENST00000513530 597 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 RNU6-1170P-201ENST00000515974 106 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 RNU6-559P-201ENST00000516151 98 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 SNORA74D-201ENST00000516404 141 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 RNU6-566P-201ENST00000516790 107 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 MIR2276-201ENST00000516886 89 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 Y_RNA.718-201ENST00000517110 102 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AP005639.2-201ENST00000527592 928 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD9P28356 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXD9P28356 AL450472.3-201ENST00000615578 367 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AC103705.1-201ENST00000619013 241 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 AC090971.5-201ENST00000621102 293 ntBASIC3.43□□□□□ -1.86
HOXD9P28356 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD9P28356 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD9P28356 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD9P28356 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXD9P28356 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD9P28356 AC066616.2-201ENST00000559334 1481 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 MTND4P27-201ENST00000450813 1354 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD9P28356 SNORA23-201ENST00000365128 182 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 SNORD116-29-201ENST00000384516 83 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 RNU6-1127P-201ENST00000384580 107 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXD9P28356 Y_RNA.579-201ENST00000390939 94 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 EIF4E2P1-201ENST00000393781 255 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AC110754.1-201ENST00000399740 601 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AL357075.1-201ENST00000404107 726 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 RN7SKP158-201ENST00000410453 326 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AC063979.1-201ENST00000415539 377 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 PPP1R11P2-201ENST00000423543 382 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 RPL23AP82-202ENST00000427528 469 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AC004866.2-201ENST00000438285 481 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 HMGB3P11-201ENST00000440127 604 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD9P28356 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD9P28356 MRPS31P2-201ENST00000451581 518 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 SCARNA18-201ENST00000459004 134 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AC004801.2-202ENST00000463559 283 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 CENPBD1P1-201ENST00000464061 469 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 RBBP4P6-201ENST00000508098 202 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXD9P28356 SNORA70.14-201ENST00000516205 110 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 Y_RNA.682-201ENST00000516457 100 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 RN7SKP57-201ENST00000517248 293 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 RANP3-201ENST00000530970 276 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
HOXD9P28356 MIR5680-201ENST00000577577 84 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AF038458.1-201ENST00000588406 262 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 APOOP1-201ENST00000604695 592 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AL162730.1-201ENST00000605734 292 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 AC012409.4-201ENST00000612923 249 ntBASIC3.42□□□□□ -1.86
HOXD9P28356 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD9P28356 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD9P28356 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.42□□□□□ -1.86
HOXD9P28356 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD9P28356 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXD9P28356 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD9P28356 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD9P28356 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD9P28356 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
HOXD9P28356 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD9P28356 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms