Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC080014.1-201ENST00000496877 1201 ntBASIC2.72□□□□□ -1.97
VIMP08670 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.72□□□□□ -1.97
VIMP08670 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.72□□□□□ -1.97
VIMP08670 RNU6-123P-201ENST00000516163 102 ntBASIC2.72□□□□□ -1.97
VIMP08670 Y_RNA.695-201ENST00000516715 107 ntBASIC2.72□□□□□ -1.97
VIMP08670 SNORA31.19-201ENST00000517079 126 ntBASIC2.72□□□□□ -1.97
VIMP08670 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.72□□□□□ -1.97
VIMP08670 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.72□□□□□ -1.97
VIMP08670 AC090572.1-201ENST00000519251 160 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.72□□□□□ -1.97
VIMP08670 CYCSP39-201ENST00000565821 309 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC034105.4-201ENST00000568304 277 ntBASIC2.72□□□□□ -1.97
VIMP08670 MIR4782-201ENST00000577987 79 ntBASIC2.72□□□□□ -1.97
VIMP08670 MIR1273C-201ENST00000578669 77 ntBASIC2.72□□□□□ -1.97
VIMP08670 MIR5004-201ENST00000579078 107 ntBASIC2.72□□□□□ -1.97
VIMP08670 MIR3158-1-201ENST00000583596 81 ntBASIC2.72□□□□□ -1.97
VIMP08670 NRBF2P1-201ENST00000587407 859 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC126118.1-201ENST00000607744 628 ntBASIC2.72□□□□□ -1.97
VIMP08670 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.72□□□□□ -1.97
VIMP08670 AL589743.7-201ENST00000612637 233 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC012409.4-201ENST00000612923 249 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC011890.2-201ENST00000613393 294 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC006133.1-201ENST00000617106 264 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC012314.7-201ENST00000619693 93 ntBASIC2.72□□□□□ -1.97
VIMP08670 Z69908.1-201ENST00000622603 247 ntBASIC2.72□□□□□ -1.97
VIMP08670 U6.105-201ENST00000637379 88 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC103710.2-202ENST00000641454 2853 ntBASIC2.72□□□□□ -1.97
VIMP08670 Z82209.1-201ENST00000422141 2135 ntBASIC2.72□□□□□ -1.97
VIMP08670 MTND5P1-201ENST00000445440 1375 ntBASIC2.72□□□□□ -1.97
VIMP08670 AC096644.4-201ENST00000563417 2912 ntBASIC2.72□□□□□ -1.97
VIMP08670 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.71□□□□□ -1.97
VIMP08670 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VIMP08670 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
VIMP08670 MIR134-201ENST00000385258 73 ntBASIC2.71□□□□□ -1.98
VIMP08670 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.71□□□□□ -1.98
VIMP08670 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.71□□□□□ -1.98
VIMP08670 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.71□□□□□ -1.98
VIMP08670 AC005326.1-201ENST00000429197 123 ntBASIC2.71□□□□□ -1.98
VIMP08670 AL161651.1-201ENST00000440882 223 ntBASIC2.71□□□□□ -1.98
VIMP08670 AC244505.5-201ENST00000443639 207 ntBASIC2.71□□□□□ -1.98
VIMP08670 MTCYBP1-201ENST00000454315 1119 ntBASIC2.71□□□□□ -1.98
VIMP08670 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC2.71□□□□□ -1.98
VIMP08670 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.71□□□□□ -1.98
VIMP08670 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.71□□□□□ -1.98
VIMP08670 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.71□□□□□ -1.98
VIMP08670 HMGB3P3-201ENST00000510526 400 ntBASIC2.71□□□□□ -1.98
VIMP08670 RNU5F-8P-201ENST00000515941 111 ntBASIC2.71□□□□□ -1.98
VIMP08670 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VIMP08670 ADI1P3-201ENST00000549509 470 ntBASIC2.71□□□□□ -1.98
VIMP08670 AL391813.1-201ENST00000603098 260 ntBASIC2.71□□□□□ -1.98
VIMP08670 AL161756.2-201ENST00000604597 246 ntBASIC2.71□□□□□ -1.98
VIMP08670 MIR98-201ENST00000606724 119 ntBASIC2.71□□□□□ -1.98
VIMP08670 AL139286.2-201ENST00000606838 396 ntBASIC2.71□□□□□ -1.98
VIMP08670 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.71□□□□□ -1.98
VIMP08670 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.71□□□□□ -1.98
VIMP08670 CU459211.1-201ENST00000635667 749 ntBASIC2.71□□□□□ -1.98
VIMP08670 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VIMP08670 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.71□□□□□ -1.98
VIMP08670 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VIMP08670 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
VIMP08670 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.71□□□□□ -1.98
VIMP08670 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VIMP08670 AC004520.1-201ENST00000608362 1413 ntBASIC2.7□□□□□ -1.98
VIMP08670 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
VIMP08670 Y_RNA.33-201ENST00000362591 102 ntBASIC2.7□□□□□ -1.98
VIMP08670 RNU6-461P-201ENST00000364195 107 ntBASIC2.7□□□□□ -1.98
VIMP08670 SNORA67.1-201ENST00000364749 141 ntBASIC2.7□□□□□ -1.98
VIMP08670 RNA5SP267-201ENST00000364893 126 ntBASIC2.7□□□□□ -1.98
VIMP08670 U3.26-201ENST00000391236 204 ntBASIC2.7□□□□□ -1.98
VIMP08670 SNORA40C-201ENST00000391285 128 ntBASIC2.7□□□□□ -1.98
VIMP08670 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.7□□□□□ -1.98
VIMP08670 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VIMP08670 MTND3P17-201ENST00000416968 344 ntBASIC2.7□□□□□ -1.98
VIMP08670 BX295541.1-201ENST00000417774 250 ntBASIC2.7□□□□□ -1.98
VIMP08670 C1DP2-201ENST00000418167 426 ntBASIC2.7□□□□□ -1.98
VIMP08670 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VIMP08670 AC092017.2-201ENST00000427600 362 ntBASIC2.7□□□□□ -1.98
VIMP08670 GCA-203ENST00000429691 824 ntTSL 3 BASIC2.7□□□□□ -1.98
VIMP08670 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.7□□□□□ -1.98
VIMP08670 MTATP6P16-201ENST00000434543 526 ntBASIC2.7□□□□□ -1.98
VIMP08670 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.7□□□□□ -1.98
VIMP08670 AL031667.1-201ENST00000440222 725 ntBASIC2.7□□□□□ -1.98
VIMP08670 SCGB1D5P-201ENST00000515134 247 ntBASIC2.7□□□□□ -1.98
VIMP08670 RNU6-581P-201ENST00000516214 105 ntBASIC2.7□□□□□ -1.98
VIMP08670 Y_RNA.688-201ENST00000516565 95 ntBASIC2.7□□□□□ -1.98
VIMP08670 SNORD19.2-201ENST00000516978 73 ntBASIC2.7□□□□□ -1.98
VIMP08670 SCARNA11.3-201ENST00000517276 130 ntBASIC2.7□□□□□ -1.98
VIMP08670 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
VIMP08670 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.7□□□□□ -1.98
VIMP08670 PSMA2P1-201ENST00000526365 646 ntBASIC2.7□□□□□ -1.98
VIMP08670 COX6CP5-201ENST00000527162 228 ntBASIC2.7□□□□□ -1.98
VIMP08670 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.7□□□□□ -1.98
VIMP08670 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.7□□□□□ -1.98
VIMP08670 AC040904.1-201ENST00000590850 223 ntBASIC2.7□□□□□ -1.98
VIMP08670 AC110760.3-201ENST00000598794 467 ntBASIC2.7□□□□□ -1.98
VIMP08670 AC091152.3-201ENST00000604227 325 ntBASIC2.7□□□□□ -1.98
VIMP08670 AC024940.5-201ENST00000622889 474 ntBASIC2.7□□□□□ -1.98
VIMP08670 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.7□□□□□ -1.98
VIMP08670 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.7□□□□□ -1.98
VIMP08670 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms