Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC087190.4-201ENST00000574616 8334 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 SNORD27-201ENST00000363981 72 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-200P-201ENST00000364743 107 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 SNORD66.1-201ENST00000391230 76 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 HDGFP1-201ENST00000405943 252 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AC009237.10-201ENST00000414112 510 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 RN7SL817P-201ENST00000480777 288 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AC144568.1-201ENST00000520139 137 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AC022080.3-201ENST00000544433 482 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 RN7SL600P-201ENST00000581811 299 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 VN1R85P-201ENST00000601587 426 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 AC140113.4-201ENST00000622087 222 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 MIR4275-201ENST00000636486 87 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 U6.104-201ENST00000637979 90 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 MIR492-201ENST00000638676 116 ntBASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP3Q9Y3E7 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-512P-201ENST00000364438 103 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-1279P-201ENST00000383917 103 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 Y_RNA.526-201ENST00000384572 110 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 EI24P1-201ENST00000416584 867 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 PIGPP3-201ENST00000425307 415 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 MTATP6P4-201ENST00000427725 675 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AC079780.1-201ENST00000428259 207 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AL121871.1-201ENST00000443413 436 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 APOOP4-201ENST00000513530 597 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 RNA5SP73-201ENST00000516744 108 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 RRN3P3-201ENST00000549207 578 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AC012603.1-201ENST00000606424 528 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AC034102.8-201ENST00000615146 484 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 AL138721.1-201ENST00000616756 179 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 LINC00901.1-201ENST00000617252 152 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 U73479.1-201ENST00000618062 168 ntBASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.28□□□□□ -1.56
CHMP3Q9Y3E7 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 MIR372-201ENST00000362225 67 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 RNA5SP130-201ENST00000364431 114 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 MIR153-1-201ENST00000384914 90 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 SAR1AP2-201ENST00000392696 594 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 MIR548M-201ENST00000408260 86 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-628P-201ENST00000410675 107 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 RPEP5-201ENST00000441137 268 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 NDUFS5P3-201ENST00000450668 321 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 RPL7P5-201ENST00000471472 736 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 RPS15AP34-201ENST00000487776 387 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 HMGN1P11-201ENST00000508668 303 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AC099522.1-202ENST00000514718 367 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AC006064.5-201ENST00000541782 248 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 RPS29P30-201ENST00000600975 111 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AC112484.5-201ENST00000624189 228 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AC027290.2-201ENST00000623210 18662 ntBASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CHMP3Q9Y3E7 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms