Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.02□□□□□ -2.25
CUX1P39880 HMGB1P9-201ENST00000429856 646 ntBASIC1.02□□□□□ -2.25
CUX1P39880 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.02□□□□□ -2.25
CUX1P39880 Z82190.1-201ENST00000454534 490 ntBASIC1.02□□□□□ -2.25
CUX1P39880 AP003484.1-201ENST00000530974 250 ntBASIC1.02□□□□□ -2.25
CUX1P39880 AC118273.2-201ENST00000532092 465 ntBASIC1.02□□□□□ -2.25
CUX1P39880 MTCO2P22-201ENST00000603246 681 ntBASIC1.02□□□□□ -2.25
CUX1P39880 AC027309.3-201ENST00000623419 351 ntBASIC1.02□□□□□ -2.25
CUX1P39880 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.02□□□□□ -2.25
CUX1P39880 AC073544.1-201ENST00000600110 1595 ntBASIC1.02□□□□□ -2.25
CUX1P39880 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC1.01□□□□□ -2.25
CUX1P39880 RNU6-105P-201ENST00000363909 104 ntBASIC1.01□□□□□ -2.25
CUX1P39880 SNORA22-201ENST00000383907 134 ntBASIC1.01□□□□□ -2.25
CUX1P39880 Y_RNA.493-201ENST00000384422 102 ntBASIC1.01□□□□□ -2.25
CUX1P39880 SNORA22C-201ENST00000384614 134 ntBASIC1.01□□□□□ -2.25
CUX1P39880 RNU6-220P-201ENST00000390919 107 ntBASIC1.01□□□□□ -2.25
CUX1P39880 RNA5SP511-201ENST00000410487 115 ntBASIC1.01□□□□□ -2.25
CUX1P39880 RPL30P13-201ENST00000418873 348 ntBASIC1.01□□□□□ -2.25
CUX1P39880 AC096920.1-201ENST00000423991 241 ntBASIC1.01□□□□□ -2.25
CUX1P39880 OR52A4P-202ENST00000481634 799 ntBASIC1.01□□□□□ -2.25
CUX1P39880 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.01□□□□□ -2.25
CUX1P39880 AC008834.1-201ENST00000511612 175 ntBASIC1.01□□□□□ -2.25
CUX1P39880 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC1.01□□□□□ -2.25
CUX1P39880 AL355877.2-201ENST00000603670 358 ntBASIC1.01□□□□□ -2.25
CUX1P39880 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.01□□□□□ -2.25
CUX1P39880 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CUX1P39880 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1□□□□□ -2.25
CUX1P39880 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1□□□□□ -2.25
CUX1P39880 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1□□□□□ -2.25
CUX1P39880 RPL23AP32-201ENST00000395315 459 ntBASIC1□□□□□ -2.25
CUX1P39880 AGR3-202ENST00000402239 563 ntTSL 2 BASIC1□□□□□ -2.25
CUX1P39880 RN7SKP158-201ENST00000410453 326 ntBASIC1□□□□□ -2.25
CUX1P39880 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1□□□□□ -2.25
CUX1P39880 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1□□□□□ -2.25
CUX1P39880 MTCYBP3-201ENST00000445588 1137 ntBASIC1□□□□□ -2.25
CUX1P39880 AC073111.2-201ENST00000605657 1075 ntBASIC1□□□□□ -2.25
CUX1P39880 AP006248.3-201ENST00000623580 594 ntBASIC1□□□□□ -2.25
CUX1P39880 AC067863.3-201ENST00000624172 122 ntBASIC1□□□□□ -2.25
CUX1P39880 RNU6-222P-201ENST00000362438 107 ntBASIC0.99□□□□□ -2.25
CUX1P39880 RNU6-1243P-201ENST00000364028 107 ntBASIC0.99□□□□□ -2.25
CUX1P39880 RNU4-31P-201ENST00000384211 141 ntBASIC0.99□□□□□ -2.25
CUX1P39880 RNA5SP56-201ENST00000410277 118 ntBASIC0.99□□□□□ -2.25
CUX1P39880 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.99□□□□□ -2.25
CUX1P39880 AC006548.1-201ENST00000427470 102 ntBASIC0.99□□□□□ -2.25
CUX1P39880 SNORA31.13-201ENST00000516624 135 ntBASIC0.99□□□□□ -2.25
CUX1P39880 RNU6-1308P-201ENST00000516817 103 ntBASIC0.99□□□□□ -2.25
CUX1P39880 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.99□□□□□ -2.25
CUX1P39880 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.99□□□□□ -2.25
CUX1P39880 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC0.99□□□□□ -2.25
CUX1P39880 AP003485.1-201ENST00000625093 753 ntBASIC0.99□□□□□ -2.25
CUX1P39880 CR381572.1-201ENST00000625098 102 ntBASIC0.99□□□□□ -2.25
CUX1P39880 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.99□□□□□ -2.25
CUX1P39880 AL513185.3-201ENST00000433335 1300 ntBASIC0.99□□□□□ -2.25
CUX1P39880 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CUX1P39880 ZNF29P-201ENST00000225587 168 ntBASIC0.99□□□□□ -2.25
CUX1P39880 RNU6-374P-201ENST00000364146 108 ntBASIC0.99□□□□□ -2.25
CUX1P39880 Y_RNA.518-201ENST00000384552 113 ntBASIC0.99□□□□□ -2.25
CUX1P39880 RPS15AP38-201ENST00000413110 372 ntBASIC0.99□□□□□ -2.25
CUX1P39880 AC098614.2-201ENST00000426040 255 ntBASIC0.99□□□□□ -2.25
CUX1P39880 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.99□□□□□ -2.25
CUX1P39880 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CUX1P39880 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.99□□□□□ -2.25
CUX1P39880 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.99□□□□□ -2.25
CUX1P39880 AL669831.4-202ENST00000590817 238 ntBASIC0.99□□□□□ -2.25
CUX1P39880 AC025588.2-201ENST00000604851 466 ntBASIC0.99□□□□□ -2.25
CUX1P39880 CBX3P1-201ENST00000325243 554 ntBASIC0.98□□□□□ -2.25
CUX1P39880 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.98□□□□□ -2.25
CUX1P39880 MTND5P15-201ENST00000434246 349 ntBASIC0.98□□□□□ -2.25
CUX1P39880 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.98□□□□□ -2.25
CUX1P39880 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.98□□□□□ -2.25
CUX1P39880 MTND4LP3-201ENST00000468320 276 ntBASIC0.98□□□□□ -2.25
CUX1P39880 AC139453.3-201ENST00000493276 369 ntBASIC0.98□□□□□ -2.25
CUX1P39880 AP003355.1-201ENST00000518956 587 ntBASIC0.98□□□□□ -2.25
CUX1P39880 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.98□□□□□ -2.25
CUX1P39880 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.98□□□□□ -2.25
CUX1P39880 ZNF92P3-201ENST00000596594 954 ntBASIC0.98□□□□□ -2.25
CUX1P39880 AC087588.2-201ENST00000617667 426 ntBASIC0.98□□□□□ -2.25
CUX1P39880 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.98□□□□□ -2.25
CUX1P39880 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.97□□□□□ -2.25
CUX1P39880 RNU6-1074P-201ENST00000383995 104 ntBASIC0.97□□□□□ -2.25
CUX1P39880 OFD1P18Y-201ENST00000420889 959 ntBASIC0.97□□□□□ -2.25
CUX1P39880 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.97□□□□□ -2.25
CUX1P39880 AC092573.2-201ENST00000434546 243 ntBASIC0.97□□□□□ -2.25
CUX1P39880 AC004854.1-201ENST00000440356 349 ntBASIC0.97□□□□□ -2.25
CUX1P39880 AL161651.1-201ENST00000440882 223 ntBASIC0.97□□□□□ -2.25
CUX1P39880 RPL30P5-201ENST00000494923 336 ntBASIC0.97□□□□□ -2.25
CUX1P39880 AP002791.1-201ENST00000623291 381 ntBASIC0.97□□□□□ -2.25
CUX1P39880 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC0.97□□□□□ -2.25
CUX1P39880 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.96□□□□□ -2.26
CUX1P39880 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.96□□□□□ -2.26
CUX1P39880 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC0.96□□□□□ -2.26
CUX1P39880 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.96□□□□□ -2.26
CUX1P39880 MED28P6-201ENST00000558776 231 ntBASIC0.96□□□□□ -2.26
CUX1P39880 AC023932.2-201ENST00000603176 175 ntBASIC0.96□□□□□ -2.26
CUX1P39880 AC138473.1-201ENST00000605717 526 ntBASIC0.96□□□□□ -2.26
CUX1P39880 AC008945.2-201ENST00000606056 604 ntBASIC0.96□□□□□ -2.26
CUX1P39880 AC097372.4-201ENST00000625025 466 ntBASIC0.96□□□□□ -2.26
CUX1P39880 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.95□□□□□ -2.26
CUX1P39880 RPL39P29-201ENST00000447779 157 ntBASIC0.95□□□□□ -2.26
CUX1P39880 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms