Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 TAAR7P-201ENST00000436141 242 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.28□□□□□ -1.88
SHMT1P34896 DDX3P2-201ENST00000446138 111 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 RNU6-953P-201ENST00000459154 107 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC087588.1-201ENST00000462203 316 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 SNORD27.1-201ENST00000516319 72 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AP001646.1-201ENST00000527936 915 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.28□□□□□ -1.88
SHMT1P34896 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.28□□□□□ -1.88
SHMT1P34896 AC007363.1-201ENST00000604736 620 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC008536.2-201ENST00000607284 349 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC092794.1-201ENST00000612734 582 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 AC139792.3-201ENST00000623525 224 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.28□□□□□ -1.88
SHMT1P34896 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.28□□□□□ -1.88
SHMT1P34896 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHMT1P34896 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHMT1P34896 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHMT1P34896 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
SHMT1P34896 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
SHMT1P34896 AL136360.1-201ENST00000503377 1900 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SHMT1P34896 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 MIR148B-201ENST00000362252 99 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNU6-179P-201ENST00000363350 107 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNU4-48P-201ENST00000365559 182 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNU6-606P-201ENST00000384721 111 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 MIR512-1-201ENST00000384913 84 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 MIR9-1-201ENST00000385198 89 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNU6-817P-201ENST00000391083 104 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 CALM2P3-201ENST00000400429 449 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AL591034.1-201ENST00000407447 340 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNA5SP21-201ENST00000410917 96 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 UBE2V1P10-201ENST00000414685 269 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.27□□□□□ -1.89
SHMT1P34896 EIF1P1-201ENST00000421436 341 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.27□□□□□ -1.89
SHMT1P34896 UBE2D3P2-201ENST00000424409 445 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC093106.2-201ENST00000428212 385 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 NDUFB4P6-201ENST00000436819 366 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.27□□□□□ -1.89
SHMT1P34896 AC093899.1-201ENST00000457984 376 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC091179.1-201ENST00000461606 579 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC006483.1-201ENST00000487308 313 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC019235.1-201ENST00000503847 207 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC117522.3-201ENST00000507974 584 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 RNA5SP291-201ENST00000517222 105 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC068657.1-201ENST00000520807 306 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.27□□□□□ -1.89
SHMT1P34896 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SHMT1P34896 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SHMT1P34896 AC027807.1-201ENST00000559921 996 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 MIR4298-201ENST00000584380 73 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC013553.2-201ENST00000604244 589 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC092954.2-201ENST00000609103 430 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC034102.8-201ENST00000615146 484 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 U6atac.1-201ENST00000616025 117 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AC005858.4-201ENST00000623191 700 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 AL157786.1-207ENST00000627771 695 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 ZNF680P1-201ENST00000436625 1469 ntBASIC3.27□□□□□ -1.89
SHMT1P34896 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHMT1P34896 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT1P34896 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.26□□□□□ -1.89
SHMT1P34896 OR4G2P-201ENST00000328113 903 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RNU6-741P-201ENST00000383889 107 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RNU6-14P-201ENST00000384630 106 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 MIR34A-201ENST00000385130 110 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RPL21P3-201ENST00000395517 478 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AL590002.1-201ENST00000406554 418 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RNU2-9P-201ENST00000410194 145 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT1P34896 OR51A5P-201ENST00000415429 942 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 Z85995.1-201ENST00000415547 335 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC114491.1-201ENST00000416095 246 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT1P34896 SDCBPP3-201ENST00000419629 891 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RPS15AP9-201ENST00000439856 381 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.26□□□□□ -1.89
SHMT1P34896 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.26□□□□□ -1.89
SHMT1P34896 AC027673.1-201ENST00000456245 405 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RNU7-182P-201ENST00000459009 62 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC146507.2-201ENST00000460608 476 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RPL37P6-201ENST00000460682 294 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RPL30P5-201ENST00000494923 336 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 MTND4LP22-201ENST00000508209 276 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 RNU6-677P-201ENST00000516914 101 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 OR5BN1P-201ENST00000532955 829 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms