Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU7-4P-201ENST00000516961 62 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA3O43365 MIR1254-2-201ENST00000579553 63 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 AL355297.3-201ENST00000604082 446 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 Z98751.3-201ENST00000604447 521 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AL021879.1-201ENST00000611756 288 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AL161629.2-201ENST00000615347 275 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AL713922.2-201ENST00000619384 716 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA3O43365 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA3O43365 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
HOXA3O43365 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA3O43365 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA3O43365 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 NOL8P1-201ENST00000508336 3529 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA3O43365 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA3O43365 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
HOXA3O43365 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA3O43365 MARK2P15-201ENST00000432204 2186 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA3O43365 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA3O43365 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA3O43365 MIR448-201ENST00000362131 111 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 MIR383-201ENST00000362257 73 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 Y_RNA.152-201ENST00000363578 100 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 RNY3P11-201ENST00000364153 102 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 RNU1-132P-201ENST00000364300 164 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 RNU4-42P-201ENST00000364738 142 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 RNU6-907P-201ENST00000390924 102 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HOXA3O43365 AL592291.1-201ENST00000403830 352 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 MIR1252-201ENST00000408861 65 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 RN7SKP27-201ENST00000410684 333 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AL160275.2-201ENST00000412010 394 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 VDAC1P3-201ENST00000434069 851 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA3O43365 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA3O43365 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 SLC25A15P5-201ENST00000508033 253 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA3O43365 SNORA40.14-201ENST00000516543 86 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC009812.2-201ENST00000517657 457 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC109479.2-201ENST00000517842 174 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AP005902.1-201ENST00000521358 186 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXA3O43365 AP003730.1-201ENST00000524605 285 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA3O43365 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXA3O43365 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXA3O43365 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA3O43365 TVP23BP1-201ENST00000557500 617 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA3O43365 MIR5696-201ENST00000578474 85 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 MIR3668-201ENST00000582138 75 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 MIR5188-201ENST00000583467 113 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 BPIFA4P-203ENST00000603168 689 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 MIR8076-201ENST00000611401 83 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 AL023881.1-201ENST00000621088 301 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HOXA3O43365 AC099506.2-201ENST00000623074 221 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA3O43365 AC140479.6-201ENST00000633535 357 ntBASIC3.55□□□□□ -1.84
HOXA3O43365 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
HOXA3O43365 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXA3O43365 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA3O43365 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA3O43365 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA3O43365 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA3O43365 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA3O43365 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 RNU6-600P-201ENST00000362524 99 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 Y_RNA.106-201ENST00000363189 100 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 Y_RNA.188-201ENST00000363952 111 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.54□□□□□ -1.84
HOXA3O43365 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
HOXA3O43365 RNU6-1222P-201ENST00000384615 107 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 Y_RNA.556-201ENST00000384677 113 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 MIR625-201ENST00000385047 85 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 MIR607-201ENST00000385241 96 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 MIR3065-201ENST00000390137 79 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXA3O43365 RPS20P14-201ENST00000412545 360 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA3O43365 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA3O43365 AC092047.1-201ENST00000424997 240 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AL159987.2-201ENST00000432754 307 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 SNRPEP9-201ENST00000436794 238 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 Z82210.1-201ENST00000440037 231 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AL078601.1-201ENST00000444542 271 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 HIGD1AP2-201ENST00000446367 280 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms