Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CBX4O00257 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.04□□□□□ -1.76
CBX4O00257 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.04□□□□□ -1.76
CBX4O00257 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.04□□□□□ -1.76
CBX4O00257 AC090740.1-201ENST00000623193 2262 ntBASIC4.04□□□□□ -1.76
CBX4O00257 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.03□□□□□ -1.76
CBX4O00257 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CBX4O00257 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CBX4O00257 FAM35BP-202ENST00000497389 3337 ntBASIC4.03□□□□□ -1.76
CBX4O00257 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CBX4O00257 SNORA75B-201ENST00000384053 137 ntBASIC4.03□□□□□ -1.76
CBX4O00257 RNU6-140P-201ENST00000384566 108 ntBASIC4.03□□□□□ -1.76
CBX4O00257 RNU6-95P-201ENST00000384697 107 ntBASIC4.03□□□□□ -1.76
CBX4O00257 Y_RNA.623-201ENST00000411128 95 ntBASIC4.03□□□□□ -1.76
CBX4O00257 RNU6-954P-201ENST00000411355 107 ntBASIC4.03□□□□□ -1.76
CBX4O00257 RNU6-1304P-201ENST00000411374 106 ntBASIC4.03□□□□□ -1.76
CBX4O00257 AC245054.2-201ENST00000415639 319 ntBASIC4.03□□□□□ -1.76
CBX4O00257 YPEL5P1-201ENST00000419731 367 ntBASIC4.03□□□□□ -1.76
CBX4O00257 AL590632.1-201ENST00000424289 371 ntBASIC4.03□□□□□ -1.76
CBX4O00257 UBE2D3P2-201ENST00000424409 445 ntBASIC4.03□□□□□ -1.76
CBX4O00257 AC092047.1-201ENST00000424997 240 ntBASIC4.03□□□□□ -1.76
CBX4O00257 AL627311.1-201ENST00000431514 115 ntBASIC4.03□□□□□ -1.76
CBX4O00257 MYL8P-204ENST00000431574 518 ntBASIC4.03□□□□□ -1.76
CBX4O00257 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.03□□□□□ -1.76
CBX4O00257 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.03□□□□□ -1.76
CBX4O00257 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.03□□□□□ -1.76
CBX4O00257 ANP32BP2-201ENST00000454525 545 ntBASIC4.03□□□□□ -1.76
CBX4O00257 AL583843.1-201ENST00000456070 346 ntBASIC4.03□□□□□ -1.76
CBX4O00257 Y_RNA.653-201ENST00000459091 95 ntBASIC4.03□□□□□ -1.76
CBX4O00257 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CBX4O00257 AL627309.6-201ENST00000606857 840 ntBASIC4.03□□□□□ -1.76
CBX4O00257 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.03□□□□□ -1.76
CBX4O00257 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.03□□□□□ -1.76
CBX4O00257 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CBX4O00257 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CBX4O00257 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CBX4O00257 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CBX4O00257 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.02□□□□□ -1.77
CBX4O00257 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.02□□□□□ -1.77
CBX4O00257 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.02□□□□□ -1.77
CBX4O00257 SNORA63.1-201ENST00000362493 131 ntBASIC4.02□□□□□ -1.77
CBX4O00257 SNORD3E-201ENST00000362899 217 ntBASIC4.02□□□□□ -1.77
CBX4O00257 Y_RNA.146-201ENST00000363549 102 ntBASIC4.02□□□□□ -1.77
CBX4O00257 RNU6-1188P-201ENST00000363795 107 ntBASIC4.02□□□□□ -1.77
CBX4O00257 RNU6-1329P-201ENST00000365664 107 ntBASIC4.02□□□□□ -1.77
CBX4O00257 RAB9AP3-201ENST00000412737 573 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC007560.1-201ENST00000426912 237 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AL645568.3-201ENST00000433683 316 ntBASIC4.02□□□□□ -1.77
CBX4O00257 BRK1P2-201ENST00000442875 223 ntBASIC4.02□□□□□ -1.77
CBX4O00257 RAB9AP1-201ENST00000449393 573 ntBASIC4.02□□□□□ -1.77
CBX4O00257 RPL21P11-201ENST00000461458 483 ntBASIC4.02□□□□□ -1.77
CBX4O00257 RPL7P49-201ENST00000471402 708 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC027575.1-201ENST00000481064 460 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC139453.3-201ENST00000493276 369 ntBASIC4.02□□□□□ -1.77
CBX4O00257 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.02□□□□□ -1.77
CBX4O00257 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.02□□□□□ -1.77
CBX4O00257 AC092436.3-201ENST00000511788 257 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.02□□□□□ -1.77
CBX4O00257 AC026726.1-201ENST00000512859 601 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.02□□□□□ -1.77
CBX4O00257 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.02□□□□□ -1.77
CBX4O00257 SNORA31.19-201ENST00000517079 126 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC009902.1-201ENST00000519351 183 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.02□□□□□ -1.77
CBX4O00257 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.02□□□□□ -1.77
CBX4O00257 AL163153.1-201ENST00000554223 283 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.02□□□□□ -1.77
CBX4O00257 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.02□□□□□ -1.77
CBX4O00257 AL645944.1-201ENST00000603857 493 ntBASIC4.02□□□□□ -1.77
CBX4O00257 AC012468.1-201ENST00000604888 430 ntBASIC4.02□□□□□ -1.77
CBX4O00257 PISRT1.1-201ENST00000616930 107 ntBASIC4.02□□□□□ -1.77
CBX4O00257 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CBX4O00257 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.02□□□□□ -1.77
CBX4O00257 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CBX4O00257 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
CBX4O00257 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.01□□□□□ -1.77
CBX4O00257 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.01□□□□□ -1.77
CBX4O00257 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.01□□□□□ -1.77
CBX4O00257 SNORD62.1-201ENST00000362541 86 ntBASIC4.01□□□□□ -1.77
CBX4O00257 RNA5SP502-201ENST00000362694 119 ntBASIC4.01□□□□□ -1.77
CBX4O00257 Y_RNA.138-201ENST00000363462 102 ntBASIC4.01□□□□□ -1.77
CBX4O00257 RNA5SP97-201ENST00000365006 84 ntBASIC4.01□□□□□ -1.77
CBX4O00257 RNU6-213P-201ENST00000384051 104 ntBASIC4.01□□□□□ -1.77
CBX4O00257 MIR34A-201ENST00000385130 110 ntBASIC4.01□□□□□ -1.77
CBX4O00257 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 HSPE1P26-201ENST00000405341 275 ntBASIC4.01□□□□□ -1.77
CBX4O00257 RNU2-37P-201ENST00000410695 177 ntBASIC4.01□□□□□ -1.77
CBX4O00257 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.01□□□□□ -1.77
CBX4O00257 AL353729.1-201ENST00000425044 720 ntBASIC4.01□□□□□ -1.77
CBX4O00257 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 AL158071.1-201ENST00000430315 461 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms