Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU5E-1-201ENST00000362477 120 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 SNORA80A-201ENST00000363922 136 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 SNORD116-8-201ENST00000384365 95 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 MIR181A2-201ENST00000384863 110 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC025750.2-201ENST00000442609 450 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 MTND6P13-201ENST00000443510 523 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 RPL37P4-201ENST00000448908 268 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 MTATP6P7-201ENST00000453315 681 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC080014.1-201ENST00000496877 1201 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 RNU6-677P-201ENST00000516914 101 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 RNU6-703P-201ENST00000516946 107 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 OSBPL9P5-201ENST00000542581 171 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC008088.1-201ENST00000580993 280 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC068276.1-201ENST00000605793 379 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AL451064.1-201ENST00000607718 471 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC091304.9-201ENST00000612091 226 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 AC010338.1-201ENST00000621823 717 ntBASIC2.59□□□□□ -1.99
DDX28Q9NUL7 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.59□□□□□ -2
DDX28Q9NUL7 AC093536.2-201ENST00000565257 1406 ntBASIC2.59□□□□□ -2
DDX28Q9NUL7 AC004944.1-201ENST00000517807 3059 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
DDX28Q9NUL7 RNU4-91P-201ENST00000364778 135 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 SNORA9.2-201ENST00000365361 133 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 RNU6-946P-201ENST00000383878 107 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 MIR592-201ENST00000384959 97 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.58□□□□□ -2
DDX28Q9NUL7 RPS3AP3-201ENST00000411933 242 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 NPM1P11-201ENST00000417106 855 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.58□□□□□ -2
DDX28Q9NUL7 AC093106.2-201ENST00000428212 385 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 AL592045.1-201ENST00000429867 352 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.58□□□□□ -2
DDX28Q9NUL7 ST13P20-201ENST00000447996 1065 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.58□□□□□ -2
DDX28Q9NUL7 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.58□□□□□ -2
DDX28Q9NUL7 RNA5SP269-201ENST00000459032 137 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.58□□□□□ -2
DDX28Q9NUL7 AC008885.1-201ENST00000514930 301 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 RNU2-46P-201ENST00000517038 113 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 RNU1-104P-201ENST00000517280 175 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 AC009812.2-201ENST00000517657 457 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.58□□□□□ -2
DDX28Q9NUL7 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.58□□□□□ -2
DDX28Q9NUL7 HMGB1P41-201ENST00000520234 440 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 MIR3682-201ENST00000581338 84 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 AC121247.2-201ENST00000604776 136 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.58□□□□□ -2
DDX28Q9NUL7 AC097520.1-201ENST00000624435 385 ntBASIC2.58□□□□□ -2
DDX28Q9NUL7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
DDX28Q9NUL7 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
DDX28Q9NUL7 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
DDX28Q9NUL7 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.57□□□□□ -2
DDX28Q9NUL7 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
DDX28Q9NUL7 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.57□□□□□ -2
DDX28Q9NUL7 NACAP2-201ENST00000318548 624 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
DDX28Q9NUL7 RNU6-188P-201ENST00000364207 107 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 SNORA71.1-201ENST00000364523 117 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
DDX28Q9NUL7 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.57□□□□□ -2
DDX28Q9NUL7 RNU1-138P-201ENST00000384093 164 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 SNORA44-201ENST00000384584 132 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 RNU6-750P-201ENST00000390946 107 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 UBE2V1P2-201ENST00000397758 440 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.57□□□□□ -2
DDX28Q9NUL7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 HMGN1P14-201ENST00000412459 517 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 ELOCP4-201ENST00000420090 333 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC007283.2-201ENST00000424739 197 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.57□□□□□ -2
DDX28Q9NUL7 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.57□□□□□ -2
DDX28Q9NUL7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.57□□□□□ -2
DDX28Q9NUL7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.57□□□□□ -2
DDX28Q9NUL7 AC009961.3-201ENST00000449832 765 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AL033528.1-201ENST00000453780 140 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC093899.1-201ENST00000457984 376 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 snoU109.1-201ENST00000459339 135 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC128713.1-201ENST00000471495 306 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC007182.2-201ENST00000489251 402 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.57□□□□□ -2
DDX28Q9NUL7 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms