Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNA5SP317-201ENST00000410176 116 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP311-201ENST00000411290 116 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AL096701.2-201ENST00000416920 238 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AL356095.1-201ENST00000417217 199 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 NUTF2P7-201ENST00000453086 375 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC139453.3-201ENST00000493276 369 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 MTCYBP40-201ENST00000509390 1135 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP315-201ENST00000516340 116 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP312-201ENST00000517068 116 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 MIR2116-201ENST00000517221 80 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 CASP1P1-201ENST00000526345 212 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 ELOCP5-201ENST00000604924 333 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC124303.1-201ENST00000605703 360 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 MIR432-201ENST00000606207 94 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 AC027309.3-201ENST00000623419 351 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 U6.99-201ENST00000637524 83 ntBASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TRIM39Q9HCM9 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 RNU6-217P-201ENST00000384164 104 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 snosnR66.1-201ENST00000391095 99 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AL592148.1-201ENST00000413568 445 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ELOCP24-201ENST00000456370 334 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 HMGN2P16-201ENST00000456802 261 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 Y_RNA.639-201ENST00000458981 102 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 HMGN1P11-201ENST00000508668 303 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC005741.1-201ENST00000511094 432 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC093303.1-201ENST00000514549 295 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC104576.1-201ENST00000524225 88 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC107016.1-201ENST00000550463 337 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 CYP4A43P-201ENST00000568156 121 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 MIR4782-201ENST00000577987 79 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC007938.3-201ENST00000604965 623 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC110741.2-201ENST00000605278 268 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 MIR6867-201ENST00000610636 67 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AC064801.1-201ENST00000612025 407 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AL161423.1-201ENST00000613700 262 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 MIR7151-201ENST00000617477 60 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AL669831.3-213ENST00000636676 183 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 AP001486.2-201ENST00000561652 5113 ntBASIC4.07□□□□□ -1.76
TRIM39Q9HCM9 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 KPNA2P1-201ENST00000458289 1591 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 FTLP6-201ENST00000355274 422 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 SNORA60-201ENST00000362396 134 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 Y_RNA.138-201ENST00000363462 102 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP130-201ENST00000364431 114 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RNU1-13P-201ENST00000384499 162 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 SNORA75.4-201ENST00000391278 119 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 MIR548P-201ENST00000408336 84 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RNU6-1304P-201ENST00000411374 106 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 HMGN2P30-201ENST00000423237 256 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 MTCYBP6-201ENST00000441810 138 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RPL37P4-201ENST00000448908 268 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC092798.1-201ENST00000458542 409 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RN7SKP21-201ENST00000516503 220 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP309-201ENST00000516670 106 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RNU6-307P-201ENST00000516743 106 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms